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53-4005-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 148977 [Map]; Strand: c
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon17 (3UTR)
      • AT2G01290.1 - [+] show detail - ribose-5-phosphate isomerase 2
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-4005-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TAGCCCTTTG TTGTGTTTGA ATGCTCTTCT 
    TTTACTACTG GGCCTGTGTT GGGCTTTGCT CCTTGTTATA TATCATCATA 
    GGCACACTAA ACACTAAAAC TATTGTTTCG CCGAAACATG AATCGTGTTA 
    GGTGTGAATC CATGTTGTGA CAAAACTAAA ACTATCGACC TCGCAGTGAA 
    TAGTAATAGT ATGATTAATA CAATCCAAAA TCATAACCAT TCTCTTCCTC 
    TTCCACTTCG TCTTCATAGA AGTTCTCATC TGCGTGTGGT GCTGCGTAGT 
    CTTCTTCATC TTCAACATCT TCTTCATCTT CAACAATCTC ATGCTCTTCC 
    TTCTTCTTCT CCGTTACTGT CTCGGTTCTC GGTTTCTTCT GTGTTGGCTG 
    AAAGAAGAAA CAAGAACAGA ATTGTATAGA CCTGAAAAGT GATGACAACT 
    AAGGAAACAA CAAGACAAGA GAAGAGAGGA TAAGAAACTT ACGCTAGTAT 
    CAAAGAGCTC GTCCAAAATA TCGGTGTTGA TTAACCTGAG TCTCTGTATA 
    AGACTCAAAA TCAGAAACCC AAGAAAACAC TTCTTCAAAA GATACAATAT 
    ATATTTACCT TCCTCTCAAG TGTTCTGCAA ACTGCTTCCG TGGCTGTAGC 
    TGGTGGAGGT GCATTCTTAG CTTCCTCGGC ACGTTTTCGT CGCTTTTCCT 
    TTCTAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 850068 [Map]; Strand: w
      • AT2G02910.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: -470; Region: promoter
    Flanking Genome Sequence: 53-4005-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    CCAAAATCGA AAGAGTGGTC AATAATATTA AAGTAAAATG TTTTTAAGAA 
    AGACTGAAAT AAAGTTATTA GAGGATCAAA TTTGGACTTT AAAATTGGCG 
    GGTTGAGCCA GGCCCGTGCA GTAGTGCAAC GCATGGGCGA CTCATGAAAG 
    CCCAGATAGC AAGCTATCTT AACGGGCTTT CTCCCTTAAA AAATAGAGTT 
    AATATCNGTG TGGGCCGATG GCCCACATAT CAGATATTAA ACTGATAAGA 
    ACAGATACTA CACTTGATCT TAGCCAAAAG GCCGAGAAAG GTATGAATT

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01290.1

Model type
Protein coding
Short Description
ribose-5-phosphate isomerase 2
Curator Summary
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02910.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF616)
Computational Description
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR