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Mutant Lines
53-4011-1

53-4011-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24356185 [Map]; Strand: c
- AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron6 (CDS)
- AT5G60580.4 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron6 (CDS)
- AT5G60580.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron7 (CDS)
- AT5G60580.2 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron7 (CDS)
- AT5G60590.1 - [+] show detail - DHBP synthase RibB-like alpha/beta domain
  Distance: -836; Region: promoter
- AT5G60590.2 - [+] show detail - DHBP synthase RibB-like alpha/beta domain
  Distance: -840; Region: promoter

CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
TTTCCCATCC TACTTTCATC CAAGGAGCAC ATTGCAAAGA GTATTTTCTA 
AAAGACGACC TACCCATGGT TGATGCGGTC ATGGATGCAA GAAGACCAAG 
AATACAAGAA AACGGCAGTG ATATAGCGAT GGCACCTGTA CCCATATTCT 
CAACCTACAA ATGGAACTTA CTGTTATAGT CTGTATATGT ATGTCTAAAT 
CCGGATGCTG GTTGTTGTTA TAAACAGTAG AGACGGATTA CCAGGAGCTG 
CTCGAGGAAG CAGAAGTAAG CGAGCATGCT GATGATTACT AGAACCGGTA 
CCTCCTGCCA CACCCTGTCG GGAAATTATA CAGAGATTTA GGTGAAGTTT 
ACTATTTAAC CAAAAGAAAG TTTGAATACT CTCTGAGGTT CAAATCTTGC 
AGAAAATTTG TACAAGAATG TGAAATGAAG AGTATTTTTA CCTATAGCCA 
GAGACATCTA GCTGAGGAAC ACCAGAATTT CGAAGGCTTT GGATGCGTAA 
GAGTGTTACA GGTAAGTTCT TAACTTCTTG TTTACACACC TCACAAGTCT 
TGTTACCCTT TATGGTGAAC CATTTAAGAG CACAATCTTT GTGGGCAAGA 
GCAAGTTCGC CTTTGCAACT ACACTCCATT TTTAAGGTTT CTCCTCCTTC 
ACAGAGCTCT ACCAAACAAA TCCTACAAAC TGCTTCATCC TCANGTATGT 
CTTCTNCATC AGCATCACCT GTTTCTGTAC AATACATT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24356180 [Map]; Strand: c
  - AT5G60580.3 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: intron6 (CDS)
  - AT5G60580.4 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: intron6 (CDS)
  - AT5G60580.1 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: intron7 (CDS)
  - AT5G60580.2 - [+] show detail - RING/U-box superfamily protein
    Distance: 0; Region: intron7 (CDS)
  - AT5G60590.1 - [+] show detail - DHBP synthase RibB-like alpha/beta domain
    Distance: -841; Region: promoter
  - AT5G60590.2 - [+] show detail - DHBP synthase RibB-like alpha/beta domain
    Distance: -845; Region: promoter
Flanking Genome Sequence: 53-4011-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
AGCTCCTCCA CTCTGACCCG TTTTCAGTTC TGGAATATTC CTATGCAGTA 
ATGAGAAGAT TTGTCTGGAT TTACGCATCT GTCCAGTTTG CGTTGGTCGT 
TCTCTTCGCC CATATATTTT ACTCTGTGGT TAGTGCTCTT CAACGCATCT 
TTTTTTCCTT CCCTTGTGAG ACACATATTG GTTAGACGTT GTGAGCTTTT 
GGTTAAATTT TAGCAACAAA ACGTTGTGAG ACATAGAAAT GCAACCTTTA 
TCATATGATA GTCTATAAAA TCAACATTTT TGTTGCTAAA ATTCGATCTC 
TCGGTGGTAA CAGGTGAAGT TGCAACCAGT TCTGTCAGTT CTTCTGTCAA 
CATTTGCTGG ATTTGGTGTA TGCATATGCG GAAGTTCAGT GATGGTTGAG 
TTTGTGAGAT GGAGACGAAG ATGGCGAGCC AGAAGGCTAG AGCAACAGCT 
GAACCATGCT TTGACTCTGT CACAACCGCC GCAACCACTG GATC
```

AT5G60580.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1587 Blast hits to 1239 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 421; Fungi - 112; Plants - 632; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.2

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1580 Blast hits to 1234 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 420; Fungi - 112; Plants - 626; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.3

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60580.4

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1); Has 1580 Blast hits to 1234 proteins in 158 species: Archae - 0; Bacteria - 10; Metazoa - 420; Fungi - 112; Plants - 626; Viruses - 18; Other Eukaryotes - 394 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60590.1

Model type: Protein coding
Short Description: DHBP synthase RibB-like alpha/beta domain
Computational Description: DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60590.2

Model type: Protein coding
Short Description: DHBP synthase RibB-like alpha/beta domain
Computational Description: DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: DHBP synthase RibB-like alpha/beta domain (TAIR:AT3G01920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR