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53-4018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26465486 [Map]; Strand: c
      • AT5G66240.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -686; Region: promoter
      • AT5G66240.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -718; Region: promoter
      • AT5G66240.2 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -718; Region: promoter
    Flanking Genome Sequence: 53-4018-1 - 5-prime edge
    AGTATGACGG CGAGATGTGG ACTTGGAGAC GGCAGAGATC ATGATGAGGC 
    GGAGAACAGC TTCGCGAAAA CGGTCCAGGA GATTCAGATC ACTAGTCTCC
    CGATTACCAG TGGCTCTGGA GTTGGTTTTT ACACNGGGGG ACACATCCGG
    CGCCAGAGTT CTTGGTCTTC ATCTACAAGC TGCTCTGATG ATTAAGTGTT
    TCCTTCCTCT TCAGCTGTCG CATGTGGGGG TTTTATTTAT ACACGAGAAT
    CTAATTATAA TCCAAGGGAG GCGCAGTTTT ATTGTCAATT AGTCTTGTCT
    TTTGCATATT TTATTAGTAC AATCTCTAAG TGATGAGACT TTCAAGTTCC
    AATATCAAAG ATATAAAATC CTTTTAAGGC TGGTCAAGTT TAAGTTTTGG
    TGAATGGTAC ATTTAATGTG TGTGTTTATA ACATGGTCGG GACATTTTAA
    GGGTATCTCC ATCCATGAGA AACCCACAAA GTTTCTCAAA AAAAAAAATT
    TTAATNTTAT NTTATAATTG GATTNTTNNA TTAAAAAAGT TTTTTTGTTA
    AAAAATGGAC CCANTNGTAA AATGAAANTT GNCGTGATGG GTTGNAAAAA
    GTNTCTNAAA GTTTCTNAAG TGANAAACTT TATNCCCTCT CTNTCCTTNA
    TTNNNATTAT TTTNATTTTT NAATNGGGGA NAAACTNTTT TNAAATCCTT
    CCAANGGAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26465596 [Map]; Strand: c
      • AT5G66240.3 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -576; Region: promoter
      • AT5G66240.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -608; Region: promoter
      • AT5G66240.2 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -608; Region: promoter
    Flanking Genome Sequence: 53-4018-1 - 3-prime edge
    GTCATACTCA TACCAGACAG ACGCCGACCC AAAAGTACTA TAACCCCACT 
    GATACTTATC ACAGCGAAGC CGTGGCTGAC TGTATCAAGT TTATCAGAAC
    CAAGAAGGCC ATCATCCACC AGGAAAACGT CCCGTAACGC CCTTAATTCT
    TATATTCTTC ATTGTCACCT CTTATTTGAT TAGCAAATTA TAATTGGTGG
    AATAAAAGCT ACCCTACGTG TATACGCCTT GCTTAATATT TTTGGGATTA
    TATATTAGTA TTAATCATTT TCTTAAGTTA CTCTTCAGTC TTCATAAGTT
    GACATCAAAA CAAATCATTA CAAATTTACG ACCAACCTTT TTATAATATC
    CTGTACCGTA AAAACGATTA CTAAAAGAAG AATGAATGTA TGTTACTGTA
    TTAGTTACCA ATATAATATG CATCGTGTAA CTTCAAATTT GGTATAGTGG
    TAGTTGTAAA TATTGGTTAT CATGTTCAAA TATTGTAATA AGTTTGTAAC
    AAGTTGATGG TAAGTCAACG ATCCACGGCT TTGCTGGATG TTGGAATGGA
    GAAGCGCATC ATTTGGGCCC ATATTTAAAA GCCCAAACTC AAAAAGTTGG
    CCCAAATAGA AAATCGTTGG CATCAGTTAA GGCGGTGGGA AGACGTCGAT
    CCCTAAAGTC GAAGCCCTTG TTAGGGCTTC TATCCATCAC CGGCGATATT
    GGTTTACGCG TCGGAGAGAT GGNTGG

AT5G66240.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 21938 Blast hits to 12469 proteins in 522 species: Archae - 46; Bacteria - 4852; Metazoa - 7701; Fungi - 4572; Plants - 2085; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66240.2

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66240.3

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G14530.1).
Link
InterPro Scan - TAIR