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53-4023-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 157039 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4023-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA TGAAGACAAT CGTTCTGAAC CTGATTCAGC 
    TCCTTGTTCT TCAGCCCAGC GAAAGGATTT GGATACCGGT ACGGTCCCGG 
    ATGTCCATCT GGTCGGAGAA GCGACATTGA AGTTGTGTCA AGTAATACAA 
    TGTTTGAATT GGAACCTTCT TGTTGTGTAG TAGTAGTCTT ATAGAACTCT 
    TCAAGCTCGA TATCACGCAT CGATACATCC TCGCTCTTCA TCTCTCCTTC 
    GCTGCCTTCC GTAAACGGCA TTGTTCGGTT ACAGAAACCA CCAGAGTCCC 
    ACTCTCCATT CTCGAAATGA TCAGGTGTTG TTGTTCTGAA GAGAACCTGA 
    GCTTTATGGT TCGGTTCAGC GACAAAGTCT AAAACCAAAC GAAGAACCTT 
    TCGGTACGAG TATAGATAAC CGAGTTCGGT CATATTGTTC TTCCCTTGGC 
    AGTAATGGCA TCCGGTTACG GTGCTGTTTT CATGGAAGAT TGTTGTTTTG 
    AGGAACCATT TTCCACCGGA GATGACAACG TAGTCGAAAT TGATGTACTG 
    ATCAGTCCAT TTCTGGTCTA GCTTGTCGAG GTGTACTCGA ATGTCTGAGA 
    AAGGAACTCC GTTCTCAAAG GTTTCAGCTT TTACAAGGAA AGGAGACCAA 
    ATGACAGAGA GTGTGAAGTT GTAAGAAGGG AATCTCCANA TCCTTGATTT 
    GTATTCCCTG TCATGGAAGA TATCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 157027 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4023-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAG 
    CACCCGGNCC GATNGATNCA TGGAATGATC TAATGGTCGA GGTGATGCTT 
    AACCGGGAAC GGCAAAGACG AGAATAGCCT CTCGACTTCA CGTGCTGTTG 
    TTTTCTAATT AGTTTGTTTG TTTGCTCGTA AAAAAGCCCA TTTATTATTG 
    GACCTTCCGT GGGTCCAAAT ACAAGCACTG TCGTTTTTTG ATGTGGGAAT 
    GAAACGCCGT GTCGTTTTAC TTCCTCAGCC AACGTTAACA TTCAGGAAAA 
    ATGGGCCACG GAACCAAATG TTTAAACATT AATAACGATG CAAAAGTTTC 
    CAAAACTTGT AAATCGGCCA TCATTCAGAT CTGCATAACA ATGGCCTATA 
    AAATTATTGA GCCGCCTCTC ATGACGTAGG CCATTTAGTT GTTACTATCA 
    CATTCAACAC GTATTGGTAT TTCAATTTGG TGGTACCTAC CATTTCACAG 
    TGAGCGTTAC TTCCTCCTCT CCATCTTCGG TAATTGAATG ACACTTATAG 
    TTATAGCTTA TTATTCGTCT ATTTCTTCTG GCAAAAGTCA ACTATCAGTA 
    TACATCATAT TAATTCAGCT TCATCAACAA TGACATTTTT ATCTATCACT 
    TATAAAAGGA AAAAATAAAC AAATATAGAT ATGATTTGCC CTTTTTCTTT 
    TCTTGTCGTC ATTCGATCAT CTAATTTCAA CCTCACGATC TGCGATATAC 
    TAAAAACAAT ATATTGCTTG TCTATT

AT1G01430.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 25
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR