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53-4029-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16681962 [Map]; Strand: w
      • AT3G45470.1 - [+] show detail - IBR domain containing protein
        Distance: -701; Region: promoter
    Flanking Genome Sequence: 53-4029-1 - 5-prime edge 
    NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATAGA 
    GCACTTTTAC ACTAAATAAT TAACTAACTA ACACCAAAAT TTATAAATGT 
    AGTAAATAAC CTTTAAGGGG TGTGAAAAGA CATCACTGGC CTGGTGTTAC 
    GTTTGTCAGC GAGGAAGGAG AATGTTTAGT GTGAGCTTGA CGTGACNTTT 
    ATTATTGGTG TTGAGGTGAG AAAAAAAATC AGGTGGTAGG AGAGAAGCTC 
    CTTTTTCTCT TTCTTTTTTC TTTACCCCTT TCCAATTGTA ATTCATATTA 
    TCTAATCTTA AAAAAAATAA TTCAAGTTCA TGATATATCA ATTAAAAAGT 
    TGTATAGTTT TCTACATATA TCATGACTTA AATTTTCTAA AACAGACACA 
    AAATAATTTA GATGTGAATA GTGCTGTCAA TGAATAACAT AACCTTCTAT 
    ATAGATACAC AATATTTTTT TGATGAAAAG ATATTAAATC CTAAGGGATA 
    ATATATAGGG AACCCAAGGG TTTAAATCTA AACCAATAAT TAAATCACTT 
    AACATCCTTA ATTAAAATAA ATAATTCATT TTAAAACGTA TATAGAACAA 
    GGTATACGGA AATAGTATAT TTACAAATAG AATAGTATCT CTCAAATTGC 
    AACAACAAAA CTCAATTTCA TCACCAAGAC ACCAAGCGCA ACAACGAAAG 
    TCGATTCTCT GAATCCAAAT TGTGTTCCTC CCTCTGTAAT TCGAAACCCC 
    CAAATCAAAT CTCACCCAAA AGTAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16681884 [Map]; Strand: w
      • AT3G45470.1 - [+] show detail - IBR domain containing protein
        Distance: -623; Region: promoter
    Flanking Genome Sequence: 53-4029-1 - 3-prime edge 
    TCTGCAAATC ACCCTTTTAT AAAAAATAAG GATATCAAGG AAAAACTACT 
    ACTGTATACT TTAAAAAAAA ATAAAAATAA TAACATTATA ACGAGAAACT 
    ATCGAGAATC CGTTGGGCGT ACCTTAAATG AATCAGTTTC TTTAAAACTT 
    TACAACATTT TCATACATTG AATGAAACAT AAATATTTGT CAAGATGAAA 
    AGACAAAAAT GGAGAAGTTA AACGTCCTTA GTGCAGTGTG ACATAATATG 
    CACCTTTAAA TTATTCATGA GACCCTAAAT TAGTTGCAGT TTTTTAAATG 
    AAAATAGTTT CTTATACAAA AAAAAANNCA NANCAGTNNA GTTNTCCNTC 
    CTTNTNANCT AANCAAATNN TNTTNTNTTT TNTGTTNCCC CNTTANTNAA 
    ATGGTGGGNA ATNAATGGCN GGCTNGNANT TNTNGCNAAA AANAATTNNT 
    NTNTCNGATT GGGTTNANCN ANAANNANTN NGNTTTTTNA NNGCAAATAN 
    CAANTNGTAA NNGTANNCCA ANNCNGGACC NANTNGNCCA NCANCTTTNG 
    NANCANGNCC ANCTTTTTAN CCAAAAATTN GNTTNTAGTA ANNCTTTTNT 
    GGTTTNTCAA AACATTATCA AGTTNGATTT TAAACTTGCA AGANAGGCAT 
    TGGTTTCTCA AACCAGTNGG GCCTCAAANA TGAAGGGANA AACTGGGGTN 
    NTTTGTTTGG AAAAACCAAG GCCG

AT3G45470.1

Model type
Protein coding
Short Description
IBR domain containing protein
Computational Description
IBR domain containing protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 2895 Blast hits to 2887 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 1211; Fungi - 626; Plants - 637; Viruses - 2; Other Eukaryotes - 419 (source: NCBI BLink).
Link
InterPro Scan - TAIR