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53-4039-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6314121 [Map]; Strand: c
      • AT1G18340.1 - [+] show detail - basal transcription factor complex subunit-related
        Distance: -190; Region: promoter
    Flanking Genome Sequence: 53-4039-1 - 5-prime edge 
    GTTCCTTGAG ATTTTGGTGT TCTTTTCCAA AAGAAAGAAC AAAGAAAACA 
    AAAGGCCCTT AAAAAAAGGC GGTTTAGTTC ATAAAGAAAA CTGGGCCTAT 
    CTAAAAATTT GAACTAATGC CATATTTGGG CTTAGTAAGC CCGGCTTACG 
    ATACGACGTT TATAGTCGGA TCTGATTCGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6314237 [Map]; Strand: c
      • AT1G18340.1 - [+] show detail - basal transcription factor complex subunit-related
        Distance: -306; Region: promoter
    Flanking Genome Sequence: 53-4039-1 - 3-prime edge 
    CAAGGAACAA ATTTATTTTT CAAACTGGCT ACTGATACGA AATTCAGTTT 
    ATTCAAGCT

AT1G18340.1

Model type
Protein coding
Short Description
basal transcription factor complex subunit-related
Computational Description
basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR