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53-4040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134418 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -108; Region: promoter
    Flanking Genome Sequence: 53-4040-1 - 5-prime edge 
    GGTGAGATCA CGAAGTCGAA CCGGAAGACA GCAATATATT TATCTTCTTG 
    TATATAAATA AATAAAAATA TGAAAAATGT ATGTTATATA TGTTGCCTTC 
    GCAAACCAAA AACAAATTGG GGTGTTTATC TAATCCTATA TAGTATACCG 
    GAACATATTG TCCGTTCCGT GCCATACAAG GTCCTCCTCT GTGTCTCACA 
    TGTGAAGTTA GGAGGCTTTT TTCGCTAACA GCTAACATGC TTGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24134534 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4040-1 - 3-prime edge 
    ATCTCACCAA AGAAACACGC AAGATCACTT CCATCGATCA ATACATGGAT 
    ACATCAGCAG TACAACTACC CTTTCGCGAT TATTCTCTTC AACCTGCTCC 
    TCGGTACATC AACGCTAGAT GTCATATCTG CTCTGTAACA GGTGCCATCT 
    ACAACGGCTA CTTTTGCAAT GATCCTATTG TTTGGATGCA TAAGGAGTGC 
    GTTGAGCTCC CATCTGAGAT CAACCATCTT TTCCACCCCC AACATCCTCT 
    CTTGCTCACA TATGAAGAGG GATGGTGGAG TTGTTTCTGT GCTTTGTGTG 
    GAGAAACAAA GCCAGCGAAG TACTTTTATA GTTGTTCCAC ATGTAAAATC 
    AAGGTGGATT TGACTTGTGG GATGAACCCA CCACCGCCAG CTATTGAACA 
    TCCCATCTGC CATGACCATC CACTTGTCTT CCTGAAGAAA AGACAGGAGA 
    AAACCCCTTG TGAAGTTTGC AAGAATAGAA TTATTGGATC ATCCTATTCA 
    TGTCTTGGAT GCGAGTTGTA CTTCCACGTG GGCTGCATCC ATCTCTCGAA 
    AGAGGTAAAT CATCCTTGTC ACTCTGATCA TCCTCTCATG CTCGTCGAAT 
    CTGAATCACT TACAGATAAT GATAAGAAGA CTTGTTTTTC TATGTGGGCA 
    ACAACCGCAT GGTATTCTTT ATCATTGNTC TATCTGCAAC TTCACACTGT 
    GCATTGGTTG TATCAAATCA CCACCACCT

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR