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53-4043-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 50556 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -2206; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 8149; Region: intergenic
    2. Chromosome: 2; Position: 53537 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -5187; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 5168; Region: intergenic
    Flanking Genome Sequence: 53-4043-1 - 5-prime edge 
    TTGCTAACAA GCTGCAAGGC AAGCTATCAG ATGATCTGAC GAGCGATCTG 
    GGATATAGGT TGCTAGATGG TTTGTCTTGC GATCTGCGAG ATAGCCGGGC 
    AGATGAGCTA AAAAAAAACA TAAGTTGCGA TGAGCNTGCA AACATGCCAT 
    TATCATTTGG TTAGCAAGAT ACGTGAGCTT TTGAGCTCTT TTTTTTTTTA 
    NGGGGCNNGG AACNNTNGGT TTNNCCNGTT TNNAAAACTT AAANCAANAC 
    ANGGNNTNGG TTTTNGGNAA ANNTTTTNNN NNAANANCAA NCGTCNANCN 
    CGGCTNANTT NNTGNGNNAC NGCAACCGTT NACCNCGNNT NANCNGCAAA 
    AATTNTTTTT NTNTTTNNAA NGNAGTNCNA NNCTNGGGNA ACNAANCTNC 
    CANCCCGGNC CNTNANCCCC GGGGCCCNNT TTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10317966 [Map]; Strand: w
      • AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 806; Region: intergenic
      • AT5G28350.1 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: -2173; Region: intergenic
    2. Chromosome: 5; Position: 10331265 [Map]; Strand: w
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: -1563; Region: intergenic
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1110; Region: intergenic
    3. Chromosome: 5; Position: 10337919 [Map]; Strand: c
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -3348; Region: intergenic
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 804; Region: intergenic
    Flanking Genome Sequence: 53-4043-1 - 3-prime edge 
    GTTAGCAAGA TCATTTGGTA ACCTATCTCA CTGCTCGGCT CATCAGTCAG 
    GTCATTTCTC TGCTAGGCAT TCAGATCATC TAGGAGAGCA TCCCACAGCT 
    CCTCAACAAC TCATGAGGTC CATCAGACTA CCTAACTCAC AAGCT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28340.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28350.1

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR