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53-4051-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11799004 [Map]; Strand: c
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-4051-1 - 5-prime edge 
    GCTCAGAGCA AGTTTGATTT CAAAAATCGG TTAAAAGGGT GTGTTTTGGG 
    AAGTTTAGAA AGTTATGGGG TCAAATCATA ATTAATTCGT TTTAGTGGCT 
    TCAGTAATTT TGTAGATTTT AGTTTTGTAA GAAAAAAATC TTAAAATAGA 
    GCGACAAGTT TCTTCTTTTG CTCTATGTTT GAGTCTGTAT CGTTTTATTG 
    TTGTATCTCC TCAATGAGTA AACTTGTATA TATTGATATG AGTAATATGA 
    GTTAGTTACT GAAAAAATTA ATATTTCTAC ACAATTTCAT ATGATAAAAA 
    AGAAAAAGAA ATCGAGTATA AATGGTCTAA AATAAGAGAC TAATGGTCAT 
    GATCACTGAT TTTGTACATA TGGTCAAAAA TGTCTCTCCT AACACATCAA 
    ACTTAGGAAG AGAGACAAAT CTTAAGTTAA GTCGAGAGGG AGACCATATG 
    CACAGTTTTC TTAAGTCAGT GTGATAATGT TTCCTCTTGT CTAATCAATA 
    AGACACAACA CACATAAACC TTAGTATAAT ACTACATGGA TCTTCGAATA 
    CACAGACAGA GTCACAGACA AGAAAAAGCA AATCACTTGC TTTTGTCTTG 
    ATCATTTCCA ATATCTACAA AAATAGAAAT CTTGAAGAGA TTATTGAATC 
    TGAAATCTGC TTTGTTTGTG CATTCTCTTC CTCGATCACC TCGCAAGATC 
    CTCTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11799120 [Map]; Strand: c
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4051-1 - 3-prime edge 
    CTCTGAGCTG TTCTTGCGTA TAGATCCTAA AACCCATCTT CACCGTCGCT 
    TGTTGAATCA TCAAATCGTT AACCACCGAC ATACTCGCGT GATTCACTTC 
    CAACTCCAAA TCCATCAACG CCGACATCAA CCTCGCCGCC GGATGATTCC 
    TCTTACTAGA TTCAACTCTA ATCATTGCGT CCCAACCAAT TATCTTCACT 
    TCAATCTCCA TCCCCACCGG TTTAATCGAA GAACACGAAG ACGACATATC 
    TCCTCCACTA GCACTCGCTT TTCTTCCGGC GAGCTCGAGT TTCACTTCCT 
    CGAGCTGGTT CTTGATTTGG AGTTTCTCTG ACTCTGTTTT GACTACTTTG 
    GATTTAAGCT CGTTGATGTA AGCGATTGCG TCACCGAGTA ACGAAGCT

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR