1. Home
  2. Mutant Lines
  3. 53-4054-1

53-4054-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18281568 [Map]; Strand: w
      • AT4G39280.2 - [+] show detail - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
        Distance: 0; Region: intron17 (CDS)
      • AT4G39280.1 - [+] show detail - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
        Distance: 0; Region: exon18 (3UTR)
    Flanking Genome Sequence: 53-4054-1 - 5-prime edge 
    AATTTGACAA GCCAGATTGC AATTAAGAGT GTACACACGT TTAAGATGGA 
    ATTGTAAAGT CCAGTAACCA AAGGTAGAAT TGAAAATACC AAGAGATAAC 
    CAAATAGAGT ATCTTGAATC AAAAAGACAA TCAAAATATA TCACTTAGAT 
    TCCAATTCGG CAGATCGGAT TCCGTTTAAT AAGATCGAGA TCCACCTGGG 
    ACAGAATAAT GACACATTGA TTGAGTATAT ACATCAACAG AACAAGGAAA 
    TGTTTATAGA AAGATATCAG AATAAATTAA TATCTTTGTG CTTACCTTGT 
    GTCCAAACAA ATCTCGGATG TTGTCGATAC CGTATAATAT CATTGTTGGT 
    CTGTTTAACG AACAAAAAGC AAGAAAGAAT CAGCAACGAC CCTGAGATGT 
    TGAAGGGAAT TAAAAACTCG TACCTTTCAA GAGAGAGACC CCAAGCGATG 
    ACTCTAACAT CCTCGGGGAG ACCCATCGGT AGAAGCATTT CGGGTCTGAA 
    CATCCCAGAG TTTCCAATCT CCACCCACTT CCCTAAACCT TCATGGTAGC 
    TGACATCCAG GAACAGGCAA AGTTTAACTT TTTCTCTCTA TTCTTACGCA 
    ATTTAGATGA CTATATTTTT TTTACCAATT ACCTGAAAAT CTCCATGCTT 
    GGCTCTGTGT AAGGGTTGTA AGCTGGCTTG AAACGCATTT TCGCATCCCT 
    GAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18280104 [Map]; Strand: w
      • AT4G39280.2 - [+] show detail - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
        Distance: 0; Region: exon18 (3UTR)
    Flanking Genome Sequence: 53-4054-1 - 3-prime edge 
    GTCAAATTTA ATTTTCACTT AGCATTTGGT TTTGTATGGT ATAAAGTTTG 
    TGAGGTGGTA TTTACGATGT AAGGAATAAG AACTTAGATC AAATAAATAA 
    GTAACTGGGC CATGAGGCCC ATTAAGTGCA AAGATGCAAC GTGGTTAGAT 
    AACAGCAGCC CATTTATTAG CCTCATTCAC ACATCATTAC AGAAACTTTT 
    CGTTTTTTAT ATAACNTGCC CCAAAGTATA AAACATTTCG ATTCCCACCC 
    CATACAAAAC GAATTGCTAG TTTGCTACCC GAGAATATCA AAACTCAAAA 
    GACTGGTCTG GTTTGATCAT CGAAAAATAT TATAAATTAA CGGGAATTTT 
    TTATCAACAA GAGATCAAAT CATAACCACA CATAAAAAAT AATTAAAAAT 
    TGACGTCAAA AAATAAATAT TGATCGTGTG TGTGTGTGTC TTTCTTTCTA 
    TACATCTTTC ATACTCCGTC GACTCGACGC GCCACGGCTA CTTCCTCTCG 
    CTGACGATCC AGTCGCTAAA CCCTCCGCCT GAGACAGAAG GCTACTTGTT 
    CCCGCTGCGA CAGGATCAGA CACGCTCTGT CTCCAACTAC CAAATATTCG 
    ACCGCTACTC GAAGATCCTC TCGAAGATCC AGTCGTACGG AATCTCTCAG 
    ATTCGCTGCT GTCTTCTCTC ACAACTCTCA GTGGATTCTC CAAGGCTTGT 
    ACTATGTGTC TCATAAGCGG CCGTCTN

AT4G39280.1

Model type
Protein coding
Short Description
phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
Computational Description
phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1); Has 10138 Blast hits to 10129 proteins in 3092 species: Archae - 343; Bacteria - 6159; Metazoa - 288; Fungi - 276; Plants - 100; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39280.2

Model type
Protein coding
Short Description
phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
Computational Description
phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1).
Link
InterPro Scan - TAIR