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53-4063-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233445 [Map]; Strand: w
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4063-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATAC GACCAATTCT AGTAGCTGAT CTCTGTAGTA 
    AGGATCGTCA GCGTCGGTTA TGATATCATT GAGCGCGATG CAGCTGTGCT 
    GGTCACACGC TAGGTCGAGA GCGTGGTAGA GAATGCGCTC GTACAATGCC 
    TTTTTCATCA CCTTGTCGAA AACGACCATG GCTCGTATCG TCACGTAGGA 
    TGCGTATTTG TCGGTCGTGA TGTGGAGGAA GCGGCGCAAG ATAGCGGCAC 
    AGAAGAAGGC GTCCACGTCA TCTGATTTGC CGAGGAGCTT CTGCACGCGT 
    CTCGAGCCGA ACTTGGTTGT GACGATCGAC ATGAAGTAAT CGGAGTCAGA 
    CGTAAGCAAC GAGGCCATCC TCTGAAGCTC TGTTTTGTCT GACTTTGAGA 
    TCATCTCTTT AAAGTAAGAC ACACCATCGC CGTCAGTCAT TAGGTTGAAC 
    AGAGCTGCGT GCAAGGGCGT GGCGGAGGCG CGTGGGGCGA ATCCAGGAGG 
    AGGAATGTAA CCGGAGGTTT CTGTAGGGTT TGGTAAAGCA TTGAACATGG 
    TCGACATTGA AAAGGTATTA TCGGAGACTG CCATTGATGT ATTTCTTGAT 
    CTACAGAAAT TTCTCTAGAA AAGGGTTTAA TCAGTTTGTG TGATTTTGGA 
    GAAGTATGAG AGATTTGTGA ATGAGAGATC TGTGGTGATG CGTANAGTAT 
    TTATAGAAAA GTTAGGGCTT TTGTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233394 [Map]; Strand: w
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4063-1 - 3-prime edge 
    GTCGTATCCA ACGCTCTCCG GCTAAGCAAC GATGCTTCAG GGAACTTTGT 
    GGTCCAACAT GTGCTTACAC TGTATGACTC GCGTTGCATT CACAACATCG 
    CCGTTAATCT TTATGGTCAG TGCATTGAGC TATCGTTTAA GAAGTATGGA 
    AGCTACATCG TGGAGAAGCT

AT5G60180.1

Model type
Protein coding
Short Description
pumilio 19
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 19 (PUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR