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53-4065-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17986162 [Map]; Strand: w
      • AT4G38430.1 - [+] show detail - rho guanyl-nucleotide exchange factor 1
        Distance: -304; Region: promoter
    Flanking Genome Sequence: 53-4065-1 - 5-prime edge 
    GATAGATATG GTGCAACGTA GTTCAGGCCG GTGTGGTACG AGAGAGTCTG 
    ATGATCCGAC AAGGAATACT TCTAGTCCAC ACAATGTCAG CCTTTCTTTA 
    TTTTCTCGGT CGCTTCGAGA TTCTCTATTC TGCTCTGTAG AAAAGATCCT 
    GATGGTTCAC TTTTAATATC CAACGGTTGA TATAACACAA GCGCATGCTC 
    CTCTTATGAG AACGGCCGTG GGATATAATT TAATCTCGCC GTTAAAAAAT 
    GTGACGACCG TGAGTTAACG GTTTATCTGT TACCAACCTC ATACCTGTCC 
    CTAACGGCAG AGGATAACGC CGTGAGTATG GATGGATGGG AGAGAAAAGA 
    AGAGAGAGAG TGTGAGTGAG GAAATGAAAG GAGTCTTTTT TATTTGTTAT 
    CTCTCATCTC TCTCTCTCTT TCTCTCTGAG CTTTGCTTTT TATCAAACAA 
    GCATCATCAT CACATCCACT TCCTTCTTCT TCCTTTCTCT GTCTGTCTCT 
    TTACCCAAAT GTGGACTCTT TGAGCCGTTA TTAGATCTCT GCCGCTTCAA 
    TAATGGGGAG CTTATCTTCT GAGGAAGACG ACGAAGTCTC TTCCGAGAGA 
    TGCGGAAGTT ACAGTCCCAG CGCCGACATT AGCGAGTCCG AGAGTTCCAG 
    CAGCTTCTCC TGCCACCGCT TCGACGGCGA GGGTGCCTCT AGCTCCATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17986046 [Map]; Strand: w
      • AT4G38430.1 - [+] show detail - rho guanyl-nucleotide exchange factor 1
        Distance: -420; Region: promoter
    Flanking Genome Sequence: 53-4065-1 - 3-prime edge 
    TATCTATCCT CGTGATTTTA CGCCACGTGT ATTACGCCCA TTCGCCTGAT 
    CTACACTGTC CATAGTATTC TGGCGTCATT AAAGTATTCA CATCGTACGG 
    TCTAGATTGC AGTTTGGCTT ACTTATTTCG TGGATTCCAG CTGTTTTCGG 
    TTATGGTTTT TTCACGCAAC GAATCTAAGC CGTTGATTAT ATTACTCTTC 
    TTAATTCAAT TCATTAAAGT ACCTATTTAA TGCCCTTTGA ATT

AT4G38430.1

Model type
Protein coding
Short Description
rho guanyl-nucleotide exchange factor 1
Curator Summary
Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.
Computational Description
rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR