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53-4070-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203013 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 76; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4676; Region: intergenic
    Flanking Genome Sequence: 53-4070-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA ATTATATGTA ACTACATTGA ACACCGGAAC 
    AATTAAACTA TTGTAAGCTG GTTTGAAAAA TAAACACAGA GTTATAATCA 
    GCAACGAAGC CTAAATGAGT CCAAGATGTT TGCAATGTTG CTTCCGTGAG 
    ATCTACGCAA GAGACGGATA AAAGGCATGA GCTTCTGCAC CAAACCCCAA 
    AACAGATCCA TCCTAGACAT CTTGGTGAAT CTCAGAGCCT TGACCACCAC 
    GAAATTCCCA AATTCATTCC TCGCCAGCCT CATCAACCTG TCTCCATCGC 
    AACCCAAAAG CTCCACAACC ACCACAACCA TTGACTCCTC CACCTCCAAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203006 [Map]; Strand: c
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 69; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4683; Region: intergenic
    Flanking Genome Sequence: 53-4070-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTACATAACT CTGGTAAGAA AAGTGTTTCG TCATAAACTA CTATTTTGTT 
    TTGTAAAGTT GGAGTTCTTA TGAAGAAGAG TTTACACAAT TTGAAAAACG 
    AAATTGGCTA ATACATTTCT TCTTGTGTTC TTATTTCTGA AAACAAAACA 
    AACCTAAATC GAGAGCTGTA AACGAATACA CATTGCAAAC TTCATCAACA 
    CCTTATGAAA GAAAAGTAAA TCATATTTGG TGCACTAAAG ATAAAATCGC 
    ACCTTGCTCA GTTAAGGAAG CAGCTTCCCT TCCATTCCAT TGTATGGCTG 
    CCTTGTCACA AGCCCAAATT CCATAAGAAT CTGAGCAATT AGTCTTGAAA 
    CCTTCCTACT AGATCAATTA TTCAGGATAA AAGACTTCAT CAAAATGTAA 
    TATACAAATC ACGAAGAGCA TACAGCTTAT ACTCAGATAA CAATCTTATC 
    AAGATAGATA CAAATGTCTC ATAGCCATCA GAAATCTCTA GATATCACAA 
    ACGGATCTTC CTGCTAATGG TTCTAGCAGA AACTTTTTTC ACATTAACGA 
    AAAATAACCA AACAAACTAA TGAATT

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR