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53-4076-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55383 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1934; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1816; Region: intergenic
    Flanking Genome Sequence: 53-4076-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TATAACCTCA TATATTGTGA TACAACGAAA
    GGCACCGGAT GGTGGAACGC ATCACGCATC ATGCATCCTC GATCCCTTTT
    CAAAGTGGTA TGTAAGAGAT CATTATTTCA ACATAACATA CATTTGCTAT
    GATGACGCAT TTTAGTCAAA TTAGTTGTTT GTTCAATCAT ATTAATAAGG
    GTCAACAGAT ATTTATACGA ACTGTAATTA AAATGATAAA ATCCAAAGCG
    ACAAGTTTGC TACTACCAAA TGTGTGTTTA ATATATATAA TTTAGAAACA
    TTGAATTTGA GAAAATGAGT ATACGGTTGC ACAAAAGAAG AAGAAGAAGA
    GGAGTATACC AACAAAAGGT TGTACGTAAT ATAATTCCGA CCCCCTAAAA
    AGATATATAA TAAGGTGGAG AGCGAGGGAT CTGAAATTGA TGGGTGTGTT
    TTTGTGTGCA TAACAAAAGT TAAAAATGTA TTTATATTAT TTTTAATTTT
    AAAATTCTTT TCTTACTTGT GTTTATTTAT TAGTTAAATA AATAATTTAA
    TGAGAGAAGC T
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55385 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1936; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1814; Region: intergenic
    Flanking Genome Sequence: 53-4076-1 - 3-prime edge
    TTTGANNACG GTAGAGGTAT TTTANCGANC GTTACCGACC GTTTTCATCC 
    TNTTNGTGCC ATCGTTTATN AACCAATTGT TGGAAATNTG GAATTATATA
    CATATACATT TAACGCACAA TATCAACATT GCAATACTCG NAGTGATTGA
    NATTTTGGAC GTAGAAGTTT TTAACAACTA ATANTAAAAT ACTTTGANAA
    ACAGTGGGAT GATGGAAGAC AGATGTGAGT TAAAGTCTGA TTATAACNAA
    ATCAAAATCT TCCTAACTCC TAGGAGAGTC TTCTTTGAGA CAAAAGTACA
    TATGCGGTGT CTAAAAGGAG TAAAAGAAAA ATGATAACTC AATTAGTTGA
    AGGACAAATA ACACCAAAAG CTGCGTATTT TATCATCATT TTACTTTTTG
    TAAGCAATGA ATANAAAAAA GCAATGAATA GCCTGTTGTT ATTCATTTCT
    TAATGACATG TCACACATAC AATATAGTGA AAGATGAANC CCAGCAAACA
    AAAAAAAAGG GAAAAAAAGG TTGNATANCT TTNTANNNNG TNTTNCCCNG
    NCCNTNTTTT TANNAAAAGN ANNCTTCANT GGGGNATAAT ACCCNTTTCC
    CCCTTGGCAC CTTAGGCNTT TGTTANGGGT TAAANNCTTT TTNCAAAANT
    AAATNGNNAA NAAATNCTTT CANNCNCNNG NTTGTTTTTT AAATNNGGAA
    ACCCGTGAGT GNTAAGGTAN NAGTNTTNTT AATATTTTTT TNCANGGATT
    GNNTTACATC ATTTTAATTC NTA

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR