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53-4079-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17910357 [Map]; Strand: w
      • AT4G38180.1 - [+] show detail - FAR1-related sequence 5
        Distance: -680; Region: promoter
      • AT4G38190.1 - [+] show detail - cellulose synthase like D4
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4079-1 - 5-prime edge 
    CGNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ACGCCACCAC AATCGCTATT ATGTGCACCA 
    TTGCATATCA CNATAGGCAG GTATCATCAG CGACGACCAT TTCACTATGT 
    ACAAATCCGG AGTATATGTC TTCATTGTCA TCTCCCCCTG ACTTGGTCGN 
    CAAGGNAAAG GAGATC

AT4G38180.1

Model type
Protein coding
Short Description
FAR1-related sequence 5
Computational Description
FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38190.1

Model type
Protein coding
Short Description
cellulose synthase like D4
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR