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53-4089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19002912 [Map]; Strand: c
      • AT5G46830.1 - [+] show detail - NACL-inducible gene 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4089-1 - 5-prime edge 
    TCCTCAACCT CCCTCGAGTC TTTTCCTCGT TGCCACCAGA GTAAACTCCG 
    TCGCCCCATT TGAGAACTGC TTCACCGGAA AAGTCATCTG TACAGACGGT 
    TTCCAGAAAA TGGTGTAACA TCCAGGGCTC GTGGGTTCCA TTCNACACAG 
    CATGTAAACG CTTCGGGAGA GTAGTCTCGA GGCTGAGATT CGCCGGAAGT 
    AATGGTGGCG ACGGATCGGA GGTCAAGAGA GCTTCGATCA TCAATAAGTT 
    ATCGTCGGTA TTAATCATCG TTGCCGGAGT ATTAGAAGTC GTCTCAAGTC 
    TTTGTATTTA TATATCTAAA CTAAACGAGA AACTATAGAG TATAGAGTGT 
    ACTCTTTATT TTGTTTCACA CGAGTGCATG AAAATATTAC ATTTTTCTGT 
    GGTTTTCTTT TCATGAATTT TAACGACCCA TGTGCGATAG CTGATGTATC 
    ACTATCACCT ATCACCAGGT AAAAGGACCA CATTTTTCTA GGTAACGGGA 
    TTGTTTCGTC GTTGAACAAA ATGGATTGAA TGAAACACGA TTATATGTTG 
    GGAATTTTGC AAAATTGACT AACAAAAAAA CTATAATTAA GAAACTAACC 
    AACAACAAAA ACAGAGATGA TATTTTGTAT ATAAACTATA ATATATACTA 
    AAGTATTCTT ATCTACACAA TCACCATCTC TTCTATGCTA TTACAACCAT 
    TAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19002979 [Map]; Strand: c
      • AT5G46830.1 - [+] show detail - NACL-inducible gene 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4089-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ACTAGGAGGA AGAAGACGAT TCTGTCGTCT CCGGAGGAGA AAGAGCGTCG 
    GAGTAATGTT ATTCGGGAGC TTAACTTGAT GATCTCCGGC GAAGCGTTTC 
    CGGTGGTTGA AGACGACGTC AGTGATGACG ATGACNGTGG AAGTGACNGG 
    ATATGGAGTG GTTCTTCTTG GTTTCCATGA CGTGGAGTTT TGGTAACGGA 
    TC

AT5G46830.1

Model type
Protein coding
Short Description
NACL-inducible gene 1
Curator Summary
Calcium-binding transcription factor involved in salt stress signaling.
Computational Description
NACL-inducible gene 1 (NIG1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT1G32640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR