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53-4090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20172540 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: -3066; Region: intergenic
      • AT5G49680.2 - [+] show detail - Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
        Distance: -3845; Region: intergenic
    Flanking Genome Sequence: 53-4090-1 - 5-prime edge 
    CTTGCGGCAT TATAACTCGA GCTATAATAT TACAGGGAAG TATTTTGTCG 
    TCAATGCTAA AGCTAACATT ATGATTGATT ATTATGTGTC GGTTAGCATT 
    CAATTAGCGA TGTGATTTAC TCATCAAGTT CCCAACAAAA TTCCAACACC 
    AACTATATGT TTACTTATTT AGCAATTTTA GTATAGTTTT TCAACAAAAA 
    ATAATATTTA TTTTCGAGGG GATGAATGAT TTCCGCTGTT ACTTAAGAGA 
    TGAGTTAGCA ACATTTTTTT GACGAAAACT TTCAGAATTT TAAAAGATAA 
    TCTTCTAAAA ATCTCTTAAA TATTTGATTC TTTGTACCAA CATTTCCTTG 
    GACTGGGCAA CCAATACAAA TTTTATTTTA ATATCATTTT GAGGTTGACA 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20172465 [Map]; Strand: w
      • AT5G49665.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: -2991; Region: intergenic
      • AT5G49680.2 - [+] show detail - Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
        Distance: -3920; Region: intergenic
    Flanking Genome Sequence: 53-4090-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG GCCCGCAAGT 
    GCATGGGTAA ATACACTTAT TTCATAATCA GGATCATATC CACCATGATA 
    GGTCGCAATA CTAGACTTCC AAGATCCAAT ATTTAATCTA TACATAGCTA 
    GATAGTTAAG AGTTTAAAAA AAAAAAATCT AANAAACCCG ATAAAATCCC 
    GAGTANCANG NGAAANGAAG TANTGAANCG AATANAAAAN CANTTAAAAA 
    ANAAANCANC TAACCTTNTG ANATTAAAAA NCAANGANGG NCCCNTNGGA 
    TCAAAGGTTN TGCNTANATA AAAAATANCT AAATNTCAAN CANTTCCGGN 
    TTAGGTNGAA CTGANCNCNG GCTTAAAAAT TAAAAAANGG NTCTNTTAAT 
    TATNATTAAN CCNCCCNCNT GAAGCTAATA ANCTATGCTA ATCNCTTATA 
    ATNGCTAAAC TCTCATNTAA AAATAAATAA TTNCANGGCA ANGCANANAT 
    GNCCAATNTT NCCTTACTAA TTTTNTTANC CTNTTAACAT TAATTTTCCA 
    GGGCTNAAAC CTTTTAATAA ACAAGNGCAN CAAAANGTCA AAATTTCAAA 
    CTTGAAANAC NAAGTCTAAT ATNTTAATAA TCTCAACCTA AATGAANAAT 
    NTTTTTAAAA GCACCATAAA ATCATTNTCC ATNTGATTCA ACTAAGTAAC 
    TNTTCCCTTA NCNTGATTNG GAAAAGACCN NTCCGTNNTA AATANTAAAA 
    GACCTGCCTA NTTAAAGATG ANACTAGAAT

AT5G49665.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49680.2

Model type
Protein coding
Short Description
Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
Curator Summary
Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.
Computational Description
Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (TAIR:AT1G58250.1); Has 241 Blast hits to 185 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 36; Plants - 79; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR