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53-4093-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24145352 [Map]; Strand: w
      • AT5G59960.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -19; Region: promoter
    Flanking Genome Sequence: 53-4093-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGTCT CCGATAAAGA CACGAGAGGA AAAAACGAAG 
    ATATTGTTTG TTTCAAAACG ACGTCGTTGC ATTCTGGATC AGAGAGATGA 
    CGTGTTGGTT GGCTGAAGAC ACGTGTACCT ATTCAGGCCC CTCTTTATTT 
    TTCTTTTAAT CTTTTTTTTT TTNTAAAAAA AATNANCGNC GTNGGGGNAA 
    AANAGTTNCG GAANGAAATN GATNAANGNC GTTTNGNNTN TTTTNAAAAT 
    TNGTTNTGCA NTNCNACANT TNNTTCNTNT CNCCTTNTTT NAAATNNGTN 
    TCCAATTNTA AAAATGGGAN NATTNGATTC NTNAAATNCA AANANCCCTT 
    AAAANCCCNC TNTNTCCTTT TTAAAAGGGA TNAANACCTN NTTNTCCNCT 
    NCCNCTCGGG GCAAANNGAA ANCTTTTTAA ANTCANCCCA AANTANNGGG 
    AANCTAAANT TTNCCCCCTA NNGAGTAAAG TNGGTAAAAG CTNCCAGNCN 
    GGGCCNNAAA CCCCNGGCCC CTTTANNNTT NGNNNNTNNA AACAAGGAAA 
    NNNNTNNTTN GGNTTTNANG ANANGATNGN GGNTNAAGTN NTTATNCTNN 
    NNNNTNCCCN TGACNTNNNN NNNTNTTNNN NTCCAAAANA NTANCNANNC 
    TNNNNNNNGG GNCNNNNNCC CCCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20752735 [Map]; Strand: w
      • AT3G55940.1 - [+] show detail - Phosphoinositide-specific phospholipase C family protein
        Distance: 2551; Region: intergenic
      • AT3G55950.1 - [+] show detail - CRINKLY4 related 3
        Distance: 956; Region: intergenic
    Flanking Genome Sequence: 53-4093-1 - 3-prime edge 
    GTTGCAGGTA GAATTAAGCA CAATTAACCA CTGGACCACA ACGGTATCAT 
    CTTATATGAT ATAAAACAGC TTGTATATAT CCGTATGGTT AAAATTTAAC 
    GACGTTAAAT GATTATGTAA CGCTCGTCAA CNGGCCGTTA TATCTCGGGT 
    TTGATTTCAC TAATAGTTTA TATATGAGAT ATTTTATGAC CACAAATAAT 
    TAAATAAGAT ATTTTTATTT TAATCCAAAA ATATTAGGTA TTAAACGTCC 
    AAATTAAAAT TAGTTTGAAT TTTTTTAATA ATTTTTTCTT TTTTGTATTA 
    TATTCTCTCA TTTTGTGTGA TTCTAATGAA GTATAGATGT AATCTAGTCA 
    AACTGCCGTC GTCCATGTGG TGTTATTTTG TTGGAAATTT CGACGCCAGA 
    GCTTTAAAGT TGAAAGCATG TATTTTCCTA GTGTAAATGA TGATGTAGTA 
    TTGAGTATAC TTTATCTCCG GTTATTGGAT TAATTATCTA TGGTTATTGA 
    TTAACCTTAT ATCGGTTCAA TGTTTACATT TAATCTTAAG TATATAAGCT 
    AATGTATGAT TACATTTCTA ATTTGAGCTA TGTCAACCAC TTATTTACAC 
    AAATAAAGTT TGTTAGATTG CCGTTGTAAA CTCTCTCTTC TTCGATTCAT 
    CATCTCCTAT ATAGGAATT

AT3G55940.1

Model type
Protein coding
Short Description
Phosphoinositide-specific phospholipase C family protein
Computational Description
Phosphoinositide-specific phospholipase C family protein; FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase C 2 (TAIR:AT3G08510.2); Has 7225 Blast hits to 3392 proteins in 352 species: Archae - 10; Bacteria - 635; Metazoa - 3351; Fungi - 1029; Plants - 675; Viruses - 45; Other Eukaryotes - 1480 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55950.1

Model type
Protein coding
Short Description
CRINKLY4 related 3
Computational Description
CRINKLY4 related 3 (CCR3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 4 (TAIR:AT5G47850.1); Has 117697 Blast hits to 115463 proteins in 4296 species: Archae - 105; Bacteria - 13273; Metazoa - 42642; Fungi - 9844; Plants - 33569; Viruses - 607; Other Eukaryotes - 17657 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59960.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR