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Mutant Lines
53-4108-1

53-4108-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19457106 [Map]; Strand: c
- AT2G47410.2 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
  Distance: 0; Region: exon25 (3UTR)
- AT2G47410.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
  Distance: 0; Region: exon25 (3UTR)
- AT2G47420.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
  Distance: -379; Region: promoter

CTAAAACTAT ACATGAAACC TGTGTCGGGT TACTACAAAC AAAACCGACT 
TCTTTTGTTT AGAGTGAAAA CTTTTAAATT TTCTTTTTAA CACTCTCTTC 
GCTATATAAT GAAAAAACTT GCCGCAGCCT AACGTGTTTA CAAGATCAAG 
AAAGGACCAA AAGAAGCATA CCGGTGTTGC CTTATCCTCA GATCAGCTTT 
CTTAACGTTT TTGTCAATTT ATCTCGCAGT CGCTTTATCT TCGAAAGCAT 
ATGTGCACTT CTAACGAAAT ACAACTCCGC ATTTGAGAGC ATTGCATCCA 
CGTCGTGTTT AAACGATTCA ATACTTCTGT AGTACTGATT CTCTAGTCTT 
TCGTGAATCA GCTCAGGGTA TAATGGAACC GGGAACCTGC GATTTTAAAC 
CAGAGTTACA CAATGCATGA ATCATTACTG CCAGATAAGA AAATCCACAA 
GTTTGATCAT ATGAGTTATT TAAATAAGCA CCGACTCAAC TATCGTTTCT 
GCTTCTCAAG TATACCACAT GGGTTTTCAT GTTCGAGTTT ATAGGACTAG 
GGGAGGTTTT GAAAGAATCA ATTGCAGAGA GCTAAGTGTT GTGAAGTATC 
GTACCTATTG CAGAAATCCA TCTTTTGAGC TGCTTCGTTT AGCTTTTGGA 
TC

3 prime edge [+] show sequence

Chromosome: 2; Position: 19457222 [Map]; Strand: c
- AT2G47410.2 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
  Distance: 0; Region: exon25 (3UTR)
- AT2G47410.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
  Distance: 0; Region: exon25 (3UTR)
- AT2G47420.1 - [+] show detail - Ribosomal RNA adenine dimethylase family protein
  Distance: -263; Region: promoter

AGTTTTAGTA CCACATGTCT GTAACCGAAA TTTACTCTGT TGTCACAAAA 
ATGACATCAT AAGTCTAATT TTATTACAAG AAGATTATTA TCATTTCATT 
TGCAAACTAA ATTGTTTTTC GTTTTAACTA CTAATATTAA CATTTTATTT 
TCGTTTTAAC TACTAATATT AACATTTTAT TTTCGTTTAA AAGGTTTGTG 
AAATCGAAAA CAAACATTAC TTGAGATGAA ATGTAATAAA ATTAAATTAA 
ATGAAAACCG ACCAGAGAAA AGAATAAAAT AAAAACAGAG TAGGTTGAAT 
AGAAAACACG GCTGAGAGAA AGTAAAGAGA AAAACCCTAA TCTTCATCTT 
CATCTTCTCC CGCCGTCGGC CGTAAGAGGT TTCGAAGAAG CAAAGTGAGC 
AACAATGGCG GGAGGCAAGA TCAGGAAGGA GAAGCCCAAG GCTTCGAATA 
GAGCACCATC GAACCATTAC CAAGGAGGAA TATCGTTCCA CAAATCGAAA 
GGGCAACATA TCCTTAAGAA CCCTCTGCTT GTGGATTCGA TCGTTCAGAA 
AGCTGGTATC AAGAGTACCG ATGTGATTCT CGAGATCGGT CCCGGTACTG 
GAAACTTGAC CAAGAAGCT

AT2G47410.1

Model type: Protein coding
Short Description: WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description: WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1); Has 67123 Blast hits to 29366 proteins in 847 species: Archae - 50; Bacteria - 8348; Metazoa - 26818; Fungi - 14890; Plants - 8157; Viruses - 8; Other Eukaryotes - 8852 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47410.2

Model type: Protein coding
Short Description: WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description: WD40/YVTN repeat-like-containing domain;Bromodomain; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT5G49430.1).
Link: InterPro Scan - TAIR

AT2G47420.1

Model type: Protein coding
Short Description: Ribosomal RNA adenine dimethylase family protein
Computational Description: Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).
Link: InterPro Scan - TAIR