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53-4125-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 76004 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -615; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -626; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4125-1 - 5-prime edge
    ATTGAGGGTC ATGTGGAGAA GGAATCCTAA TGATCTCACC CTGCTTACAG 
    CCTTGAAGCT TGGCCAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 76120 [Map]; Strand: c
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -731; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -742; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4125-1 - 3-prime edge
    CCCTCAATGG CCTATCCTCT TACCTGTCCG CTTTAAAGGA AAACGCTCGT 
    CTGCTAAGAT GGCAGACACT GAGATTCTTA TCACCAAGAC TGGAATCTAT
    AATCTCTTAT TCATATCTTG TGATCCACAA CTTAAGGGCC TCAAAATGAC
    CGGAAAGACT GTTTGGAAAA ATCCCGACGG CTATCTTCCT GGTAGGATGG
    CTCCACTCGT GAATTTCTAT GTCTATATGT CTCTCGCTTA TTTGTTGCTC
    AGTGCCGTCT GGTTCTTCCA GTATTTGAGG TTCCGGATGG ATATATTGCC
    ACTTCAACAT TGCATTACTG CCGTCATTCT TCTAGGATTG CTTGAGATGA
    TCTTTTGGTA CTTGGATTAT GCTAATTTTA ATCACACGGG GATGAGGCCT
    TTAGCCCTTA CTACATGGGT TGTTACCATT GGTGCCTTGA GAAAGACTGT
    TTCCCGCATT CTCATTCTCT GTGTTTCCAT GGGATTTGGG GTTGTCNAAA
    TCTACTCTTG GTGGTCTCAC TTCTAAAGTC CTCCTTGTTG GAGTTACTTA
    CTTCATAGCT TCTGAGATCC TTGATATTGC TGAGCACGTT GGCATCATTG
    ACGATATGTC CGGAAGATCA AAACTTTTTC TTGTCCTTCC TGACGCCTTC
    CTCGATGCAT TTCTCATATT GNGGATATTT ACCTCTCTTT CGAAACACTG
    GAACAGTTAC AGGTATCTCT TTCTTTCTAA TATAGCCATC A

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR