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53-4130-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19601461 [Map]; Strand: w
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-4130-1 - 5-prime edge 
    CTCGCGTCGT CTGCGATGGC CTCTACCGAG CCGTTGATAT CTTCCTCAAG 
    GTATAAAAGA GTCTGCTTTT GAGAATGAGT GTTGTATGAT TTTGATTGCT 
    GTGTTACGGT TTTGTATTAG GTTCACCCCC ACATGAAAGA TTCGGAACGT 
    TACCGTCTCT GCAAGACAGT CAGCTGTAAG AAACTGTCGC AGGACGCAAG 
    CAGCCACGCG GCGCAAAACG AGAGACTTCC GGTTCAGATT GCGGTTCAAG 
    TCCTGTTCTA CGAACAGACA CGGCTCAAGA ACGCCATGAC CAGCGGCGGT 
    GGCACAGGCG GTTCGAACCA AAGCCAGTTC TTCTTGTTCC CAAACCGCTC 
    GGGAAGCGGG ATGGCAAGCG GAGCCATCTC GCCGAGGGAC AACTATGCAT 
    CAGTGAGAAG AGAGAACAGA GAGCTGAGAC TAGAGGTGGC CAGGATGAGG 
    ATGAGGCTAA CGGACCTGGA GAAAGATCAT GTATCGATGA AGAGAGACTT 
    CGTGAAGCCG CAGAGCAGGA GGGAGGCGTT ATGGAATGTT GAGGAAGCTC 
    TCGAGAGGTC TGAACAAGTT GAACGCAATC GTTTTGAGAT TTAGGAGCAG 
    CCAAAGTGTT GCCAGTAGCG GTAAAAAGCA TACGGAGGAG AAAACGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19601397 [Map]; Strand: w
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4130-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GAGACGCGAG CATGGTCAGG GAGAAGCTCT GCGAGTGCTA TAAACTTGGA 
    GGGAGGAAGG CTCGAGTCCA GAGCCACCTC AGCGAGATAA CTATCCATCA 
    GCTTCGACAC CTTGAAGATG GAGCTCTGTT TCGGTGACTC AGCCCCCTCG 
    AAATCGTACA TGGCCATCTC GCTCTCGTCC ACCGCGTCCT CCTCGTCGTC 
    ATCATCATCT CTGTACTCGC ACTCGTCAAG GTTCAAGAAC ATTGAGAAAA 
    TCCTCTGCAC CGAGTCGGTG TCGTACATGG CGCCGATGTT CGCCGGAATA 
    AGGATGTCTT CAAGGATGGC CTGGTCGAGC AGGTGGCTGA TCCGTCTCTC 
    CAGATCGGAT CTGCAAGAGA CGGAGGTGCC AGATCCTATA GCGGTCTTCA 
    ACAAGCTAGA GAGGAACGAG ATCGGAATCG AGCTTTTGTT CGCTTGCGTT 
    GGGAGGAGCC CGACGACCGC TTCAAGGACG ATTCGCTGTT TCCTCTGAAG 
    ATCGGAATCT GATTTGACGA GATTCGGTTC TCTGATGATC TGCAGTGATT 
    TGCGAGCGTA GCTCATAAGG ATGTCACTGA TAATGTCGTG ATTGAGACCT 
    TTGGACTTCA TGGCGGAGAG AACTCTCTGG AAGAAATCAA GCT

AT2G47860.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.2

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.3

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1).
Link
InterPro Scan - TAIR