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53-4157-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24234023 [Map]; Strand: c
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: -16; Region: promoter
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -518; Region: promoter
    Flanking Genome Sequence: 53-4157-1 - 5-prime edge
    TTCACAAGTC TCTCATACTT CTCCCAAATC ACACAAACTG ATTAAACCCT 
    TTTCTAGAGA AATTTCTGTA GATCAAGAAA TACATCAATG GCAGTCTCCG
    ATAATACCTT TTCAATGTCG ACCATGTTCA ATGCTTTACC AAACCCTACA
    GAAACCTCCG GTTACATTCC TCCTCCTGGA TTCGCCCCAC GCGCCTCCGC
    CACGCCCTTG CACGCAGCTC TGTTCAACCT AATGACTGAC GGCGATGGTG
    TGTCTTACTT TAAAGAGATG ATCTCAAAGT CAGACAAAAC AGAGCTTCAG
    AGGATGGCCT CGTTGCTTAC GTCTGACTCC GATTACTTCA TGTCGATCGT
    CACAAACAAG TGCGGCTCGA GACGCGTGCA GAAGCTCCTC GGCAAATCAG
    ATGACGTGGA CGCCTTCTTC TGTGCCGCTA TCTTGCGCCG CTTCCTCCAC
    ATCTCGACCG ACAAATACGC ATCCTACGTG ACGATACGAG CCATGGGTCG
    TTTTCGACAA GGTGATGAAA AAGGCATTGT ACGAGCACAT TCTCTACCAC
    GCTCTCGACC TAGCGTGTGA CCAGCACGGC TGCATCGCGC TCAATGATAT
    CATAACCGAC GCTGACGATC CTTACTTCAG AGATCAGCTA CTAGACTTGG
    TCGCATNCCA CGCTCTNCGG CTAAGCAACG ATGCTTCAGG GAACTTTGTG
    GTCCAACATG TGCTTACACT GTAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24201819 [Map]; Strand: w
      • AT5G60100.2 - [+] show detail - pseudo-response regulator 3
        Distance: -455; Region: promoter
      • AT5G60100.3 - [+] show detail - pseudo-response regulator 3
        Distance: -415; Region: promoter
      • AT5G60100.1 - [+] show detail - pseudo-response regulator 3
        Distance: -455; Region: promoter
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 53-4157-1 - 3-prime edge
    CTTGTGAATG AGAGATCTGT GGTGATGCGT AGAGTATTTA TAGAAAAGTT 
    AGGGCTTTTG TTTTTCTAGT TACAATTACA CAACTCGGAT TACTACTAGG
    AAAAGGAAAC GGAAACTTAT TTGGTGGAGT TTCCTTTTTG TTTTGTCAAT
    TTTCCTTTTT TCTTTGCATT TTCGTAACTG TCATGATTTT AATCTATCTT
    TTTTTGGTGT GTGAAGATAA TAATAATCTA TCTGAAACAA ATGGAAATAT
    GTAATTTGTT TTTTGTAAAT CGACAATAAC TTAACATGTC GATAATCTCT
    AAACCAACCC CTCGCAGTCC AAGCTACCAG NCCNGGCCGT AGANCACCTG
    GCNCCTTTTA GAGTCNAATA TGACTTGATG TCATGTGTAT GATTGAGTAT
    AAGAACCTAA ACCGCAACCN CATTTTTAAA GGCGTAAGAA TTGNTTCCTT
    GTTANAANAC ACACAGCCNA ANACTCATAT GGACTTTGGC TACNCCNNNA
    AAGNTACCAN CCCGGGCCGN NGACCACNCG NNNCC

AT5G60100.1

Model type
Protein coding
Short Description
pseudo-response regulator 3
Curator Summary
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description
pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60100.2

Model type
Protein coding
Short Description
pseudo-response regulator 3
Curator Summary
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description
pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1).
Link
InterPro Scan - TAIR

AT5G60100.3

Model type
Protein coding
Short Description
pseudo-response regulator 3
Curator Summary
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational Description
pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1).
Link
InterPro Scan - TAIR

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60180.1

Model type
Protein coding
Short Description
pumilio 19
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 19 (PUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60190.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Curator Summary
Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR