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53-4163-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11762002 [Map]; Strand: w
      • AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
        Distance: -290; Region: promoter
      • AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 53-4163-1 - 5-prime edge 
    ATGATGATGA TGAGCGCTTG GTCTCCGTTG ATTTAGCATC TACCACTTTC 
    TTTGGCATTG TTGATTAGTA TCTAAAAGTT GACTAATTTA ATGAAGAAAT 
    CAAACGAAAG ATTCTAAATA TCTATCTTTA TCTACACAAT ACAATAGTAT 
    TGATCATCTA CAATAAGAGT CGGGGGTGTA TTCAGTTAAC TATTTAAAAT 
    GATTTGTCTT AAAATCATAT ATCTTACGTC ATTTTAATCC CAACGACTTG 
    TCCAGTGCTA GCTATAAATT AAAAACTCGC CTTTTGCCTA AATGAATCAA 
    TCACAAAGAG AGAGAGGGAA ACAAAATAGA AAGAAAGAAG CTAAGAACTA 
    ATAAGCAATT AATGGGGAGC TTAAGGTTGA GCACAGTCGC TATTGCAGTA 
    GTCGTTTGTC TCTCCATTCT CCTCATATCT CCTACAGGTA CGTAAAAAAA 
    ACCAAAGTCT TTGATCCCAA GATCTAAAAT AAAACATGTT TATAAAATGT 
    AGTATCTTCC TATTGATTGG ACAGAAGTAG ATGGGAGGCA AGTGTGTGAC 
    TACGATAAAG GNGAATGGTA ATAGTTATGA GAAGAGCTCT ACTTGTNTTG 
    AACCATGCCA GCAATTGGAC AGCAAGTTTA TTGGAGGCCG ATGCATACCT 
    GTNGGNGGGA TTACTGGTAT GGGGGTTTTN NGNTTGCTGC CNNGANGNCC 
    ANCGNGGNGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11761886 [Map]; Strand: w
      • AT4G22220.1 - [+] show detail - SufE/NifU family protein
        Distance: -926; Region: promoter
      • AT4G22230.1 - [+] show detail - Arabidopsis defensin-like protein
        Distance: -406; Region: promoter
      • AT4G22230.2 - [+] show detail - Arabidopsis defensin-like protein
        Distance: -406; Region: promoter
    Flanking Genome Sequence: 53-4163-1 - 3-prime edge 
    ATCATCATTG ATTCATTTTT CCTTCAATCA TATTTGTTTG TTTGTTTTTG 
    CTTTTTATTA GTATATCTGA AACCTTTGTC CAAAAAAAAA TATTATATCT 
    GAAACCAATT GCATGCATAA TGAAACTTAA ATTTTTGTTT GTTTCTCGGT 
    ACCACATGTT TCACGGTATA GATGCATAAT GAACTCGTGT CTTAAAATAA 
    CTTTATATTT ACGAATCTAT ATGTACTACT TTAAAAAATA CATATTAATA 
    TATTTTAAAA TCCATATTTC TCAATCCTCA ACTTAATTTG CTATCTAACT 
    CGCTTCACGA GAAGCTACCA NNCCGGGCCG TNGCCACCGG GCCCCCTTNA 
    GGNTTTGGNG TCTTCTAACA AGGATACACT ACTTAGGCTT ACAAGATCGG 
    GTTGCGGNTN AAGTTCTTAT ACTCANTCNT ACAAATGACA TCAAATCATA 
    TTCGACTCCA AAACACTAAC AAACCTTNTT CTTGCTTNTN AAAGCT

AT4G22220.1

Model type
Protein coding
Short Description
SufE/NifU family protein
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISU1; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISCU-like 3 (TAIR:AT4G04080.1); Has 5453 Blast hits to 5453 proteins in 1998 species: Archae - 110; Bacteria - 3654; Metazoa - 148; Fungi - 154; Plants - 89; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22230.1

Model type
Protein coding
Short Description
Arabidopsis defensin-like protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Arabidopsis defensin-like protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22235.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22230.2

Model type
Protein coding
Short Description
Arabidopsis defensin-like protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Arabidopsis defensin-like protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22235.2); Has 34 Blast hits to 34 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR