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53-4164-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4519321 [Map]; Strand: w
      • AT5G14000.1 - [+] show detail - NAC domain containing protein 84
        Distance: 21; Region: intergenic
      • AT5G14010.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -2828; Region: intergenic
    Flanking Genome Sequence: 53-4164-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAAGTAA AGTGATATAT AGCTGAGGAA TACGAAGTAA 
    AGTTGAATTG AAAGGAGGTA TCTATCTTTC TCATGGATGA GAACTTGATT 
    CCTTTTCTTT TCATACCACA TAAGAATCCA TAGCATCTAT GTATTTTTAA 
    GAAACAATTG TATAGACTGT TATATTATAT CAATAAGTAT GGAAATTAAT 
    TTATTAATAT GAGATGGAGA TGCATTTTGT ATTAAGGTAT AGCAAGTTGA 
    AAAAGTTATA TAAATTGGTG TGTTATTTAT GTATATATAT GTGGATGGAT 
    GAGTTATATA TACAAACAAA TTGGTGTGTT GGAAATAACA AAGAGACAGA 
    AGCAAGAGTT GAAATTGAAA TTGAAATGAG TGGAAAAAAT GAAAGAAGCC 
    ATCGCATGGG GTGTCGAGAA GCTAAAGTTC TTCGTGTCGA ACCATATTTT 
    TTAATCAAAA CATACAGATA CATTTATTGT CATTGACACG TATTTTAAAT 
    TTAAACTCTA TCAGAAGCCA ACATATTTTC TTAAATATGA TATGTGTTTG 
    ACAAACCAAA TGATAACATG CGTGTGAGTT GTAGAAAGAA TCATCGTAGA 
    TATAATTGAT ACGAATACAT TTGTTTGAGT GAAATTCATG AATTAGTAGA 
    GTTATACATT TGTTGCATGA AATCATGAAT AGTANAGTTA TAATATTATA 
    TGTACGTTTC CACATTTTNT NTCAAAACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4487660 [Map]; Strand: w
      • AT5G13920.1 - [+] show detail - GRF zinc finger / Zinc knuckle protein
        Distance: -227; Region: promoter
    Flanking Genome Sequence: 53-4164-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    GCCTATAGGT GTTATTTGGT CAGCTGTAGT TTTTAACCGA TCAGAACGAC 
    ATGGTTCTCA TATTATACAC AACACACTTG TTTCGTTAAT CTGCTTAAAG 
    TCTTCAGGCC CATTAAGCCC GTCCCATATT CAGCATGTTT TGTTTAGTCA 
    TAGCTAAAAA TAAATTATGT GGGCTTAAAA AAGATGACCT GGCCCATATT 
    AACATCCCGA GAAGGAGAAT GTTCGACGAA TGCTTAACGG CACAATGCAG 
    ACCGGAAATT GCTTCCGATG CCGTCAGGCT GGCCACTGGA TCAACGATTG 
    TCCTCTCAAA TCCTACACCG ATGATCCTCC ACCGGCGATC CAATGCCCAT 
    GCGGCGGAGG TTTCTGTGAA ATCAAGGTCG CGAATACTCG AGAAAATCCC 
    GGAAGGAAGT TCTACAAGTG TCCAACGGTT CGTACTCGCT TTCTTTACTG 
    ATTCTTCATC TCCTGCAAAA TTCGCGAGGA AATTTGAATT TGTTACTGAC 
    GACATTTGAA ATTCGCAGGC TCAGAATTGC TGTTTCTTCA AATGGTGTGA 
    CAAAGTAACC GACGAAGATA TCAAATTCCG TCCTGCCTTC ACCATCCCGA 
    TTTGTTCCTG CGGTGCTGGA CCTTGCCNGA GAGTTAAAAG ACGTTTCCGG 
    TAGAGCTTAC CTGATATGCT GCATCAAAAA GGTTTTGACT CGTTCGCAAG 
    TTTAAAGCTC ATAGTTGATA ATTCTGGTTA ACATTGGTTT AGAAATGNG

AT5G13920.1

Model type
Protein coding
Short Description
GRF zinc finger / Zinc knuckle protein
Computational Description
GRF zinc finger / Zinc knuckle protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: GRF zinc finger / Zinc knuckle protein (TAIR:AT1G54930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14000.1

Model type
Protein coding
Short Description
NAC domain containing protein 84
Computational Description
NAC domain containing protein 84 (NAC084); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14010.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Encodes KNUCKLES (KNU), a C2H2-type zinc finger protein with a conserved transcriptional repression motif. Mediates the repression of WUS in floral meristem determinacy control.
Computational Description
KNUCKLES (KNU); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: floral meristem determinacy, regulation of transcription, regulation of flower development; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 4 (TAIR:AT1G66140.1); Has 934 Blast hits to 934 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR