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53-4168-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23672934 [Map]; Strand: w
      • AT5G58570.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4168-1 - 5-prime edge 
    CCTATGGCTA TGTGGAAATG GATTGTTTGC TTACAACAGG TGAGGGCTTG 
    AGTGTCCCGC TCCAGGAAGC CTCTTCTGAC AGGTCGGACT GGTGACTGTA 
    ACGGCGTTTC AGACAAGGAA GCAACACAGA GGAACAAGAG GAAGACGGCG 
    AAGCTGATGA CAAGAACTAC CGTCAAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23672818 [Map]; Strand: w
      • AT5G58560.1 - [+] show detail - Phosphatidate cytidylyltransferase family protein
        Distance: 0; Region: exon5 (3UTR)
      • AT5G58570.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-4168-1 - 3-prime edge 
    GCCATAGGCC AAATAACAAA CAAACATGTA TTGAATATCT GTTACAAAAG 
    AGTATCTGTT ACAAATTGTA GAAGCGTCAC TGTTCGTCAT CATATGTCTC 
    ACTAATGGAT AGAACATTAC AACATTGTAC CCAACTGCAA TTGCAGCTGA 
    AAAATAAGAT TTGTGGACAA CAACAATATG AGATGTTTCA CTAATACGTA 
    CATACAGAAG AAGATGGGAA CAATGAATGC AGTTTTACCT CCATATCAGC 
    AATCAAGCTC GACCCTTTAT TTGATGATAC ATAACAACGA GAGGGTATTA 
    TTAGAAGAGT AAGAATCCGG CCAAGGCAGA GGTTAAGGAA ATGGTGAGAT 
    TGTCGTCAAT GTCGGTGCTT ATTGGGAGTG ATTCCACAAG AGCTGATGCT 
    ATAGAGATGA CGAGGAAACG AAGAATCATT CCCCCGCTAT CCTCGATGTA 
    ACCAAATGAA GCAAAGTAGT ACATATACCC AACAGATGCT AGAAACCCGG 
    CGGTGGCCAT TCCAATGCTA CCAGCAAATG ATTTGTTTTT GTTGTAAGGA 
    AGCT

AT5G58560.1

Model type
Protein coding
Short Description
Phosphatidate cytidylyltransferase family protein
Computational Description
Phosphatidate cytidylyltransferase family protein; FUNCTIONS IN: phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: vitamin E pathway gene 5 (TAIR:AT5G04490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58570.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR