Home
Mutant Lines
53-4170-1

53-4170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 9520324 [Map]; Strand: w
  - AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon6 (CDS)
2. Chromosome: 4; Position: 9540315 [Map]; Strand: w
  - AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon6 (CDS)
  - AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: 0; Region: exon6 (CDS)
Flanking Genome Sequence: 53-4170-1 - 5-prime edge
```
TACTACAGTG AGCCTCCAGA AATCCTCAAT GCAGCAGGGA ACTTCTTCAA 
TGGCGGTGTT TTCTAGATAG AGACATACGA TATTAGTTGA AATCAGAGGA 
AAAGTTCTCA AACTTGAGCA ACCACTGAGA TCAAGCATAT CCAGAGATGA 
CAAGTTGACA TCGGTTGGAA GAACCTCCAG CCCTGTGCAT CTTTTCATGT 
ACAAACGTCT CAAATTTTGA AGATTCCCAA TTGTAGAAGG AAGTGTCACC 
AAACTTTTGC ACCCGCTGAG ATATAAACGC TTCAGATTGG TGGCCTTTGA 
AAGATC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 9501609 [Map]; Strand: w
- AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
  Distance: 0; Region: exon5 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTTACTGATG TATTGTTGCC AGAGGTTGAA AAACATCTCC CCAAACATTT 
TCAGACTGAC AAGTCTAATG GTGGCCGACT TTACAGACTG TAGAGGTGTC 
ATCAAGGCGT TGAGTGATGC AACTGTGGTA GCGACAATGG AAGATAGCGT 
TTCTTGTGTA CCACTATCTG AAAACATTGA ATATACATGT GAACGTTTCT 
GGGAAAAGTT GTATGACAGA AATTCCAGAT CTTTCTTTAG CCATAAAGAT 
GATGATGGCG ACGTATATTG GGTAAATTGG GACTTAGATA GGGAATATTT 
TAGCTTCCGT AATTGCTTCA AATTGGAAAG AGATGCGCGA GAACTCATCC 
TACGATCATG CTTCAAGCCT GTGGCCTTAC CAGGTGGAGA AATCCCTAAG 
TATTTCACGT ATCGAGCTTC TGGAGATTCC CTAACTGTCA CTTTACCTCA 
GAGCTCTCTT TCTCAAGAAT CCTTGCTATT TAAGGCTTGC GTCGTGGTTG 
AACCTCTCTC CTTGGGTTTT TCTCCATCCT TGAAGGTAAA AGTTAGCTTC 
AATGGCACAC AGTATCAGAA ATCGTTTTTT GAAGATGCAC AACTGCAGTT 
TTGTAAGACG GATCATCTGT TTTTCTGTTC CTTCAATATC TCCCCTGAAG 
ATCTTCCATC TAAATTGACT TTCAAAGATG TGGAGTTTCA GTTTTGTTGC 
TCCAATAGGA TAAAAGAATG CCGGTGTCCA CTC

AT4G16890.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary: Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description: SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16920.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR