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53-4170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9520324 [Map]; Strand: w
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon6 (CDS)
    2. Chromosome: 4; Position: 9540315 [Map]; Strand: w
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon6 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-4170-1 - 5-prime edge
    TACTACAGTG AGCCTCCAGA AATCCTCAAT GCAGCAGGGA ACTTCTTCAA 
    TGGCGGTGTT TTCTAGATAG AGACATACGA TATTAGTTGA AATCAGAGGA
    AAAGTTCTCA AACTTGAGCA ACCACTGAGA TCAAGCATAT CCAGAGATGA
    CAAGTTGACA TCGGTTGGAA GAACCTCCAG CCCTGTGCAT CTTTTCATGT
    ACAAACGTCT CAAATTTTGA AGATTCCCAA TTGTAGAAGG AAGTGTCACC
    AAACTTTTGC ACCCGCTGAG ATATAAACGC TTCAGATTGG TGGCCTTTGA
    AAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9501609 [Map]; Strand: w
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-4170-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTACTGATG TATTGTTGCC AGAGGTTGAA AAACATCTCC CCAAACATTT
    TCAGACTGAC AAGTCTAATG GTGGCCGACT TTACAGACTG TAGAGGTGTC
    ATCAAGGCGT TGAGTGATGC AACTGTGGTA GCGACAATGG AAGATAGCGT
    TTCTTGTGTA CCACTATCTG AAAACATTGA ATATACATGT GAACGTTTCT
    GGGAAAAGTT GTATGACAGA AATTCCAGAT CTTTCTTTAG CCATAAAGAT
    GATGATGGCG ACGTATATTG GGTAAATTGG GACTTAGATA GGGAATATTT
    TAGCTTCCGT AATTGCTTCA AATTGGAAAG AGATGCGCGA GAACTCATCC
    TACGATCATG CTTCAAGCCT GTGGCCTTAC CAGGTGGAGA AATCCCTAAG
    TATTTCACGT ATCGAGCTTC TGGAGATTCC CTAACTGTCA CTTTACCTCA
    GAGCTCTCTT TCTCAAGAAT CCTTGCTATT TAAGGCTTGC GTCGTGGTTG
    AACCTCTCTC CTTGGGTTTT TCTCCATCCT TGAAGGTAAA AGTTAGCTTC
    AATGGCACAC AGTATCAGAA ATCGTTTTTT GAAGATGCAC AACTGCAGTT
    TTGTAAGACG GATCATCTGT TTTTCTGTTC CTTCAATATC TCCCCTGAAG
    ATCTTCCATC TAAATTGACT TTCAAAGATG TGGAGTTTCA GTTTTGTTGC
    TCCAATAGGA TAAAAGAATG CCGGTGTCCA CTC

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR