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53-4188-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 484365 [Map]; Strand: c
      • AT2G02030.1 - [+] show detail - F-box family protein
        Distance: 536; Region: intergenic
      • AT2G02040.1 - [+] show detail - peptide transporter 2
        Distance: -3058; Region: intergenic
    Flanking Genome Sequence: 53-4188-1 - 5-prime edge 
    CCAAATTTGG TGTGTTATGG TTGGAGTTGC TCTTGGTACT AGCATTCGCC 
    TTTACACTGA GTGGTGTGAC GACAATATTG TCAAAATTTT ATGCTCCGTT 
    AACTCTACAT ACTTGTTTGA TTTGGTATGA CAAAGTTTTT ACTTTAAAAG 
    GAGTTAATAG TAGTGAGTGT TTCTTTGGTT TCTTTCTTTC AGAATCCTAC 
    CGAGCATTGT GTTAACGGAG TTAGTATATA TATTTTCAAC AAGCAAGTCA 
    TACAATTTGA TTTTCATTCA AGTTATTGGA TAAAGACATA TAATATAATG 
    GCCAGTTTTT AATTTTTGTC TAGAAAAGAG CTACAAACTT TGCTAAAATT 
    TCAGTGGCAA GTGACAAAAG TTGAAAAATA CAAATTGCAA ACTGAAGAGT 
    TTGGATCAAG ATCGAGAGCA ACGAGATTAT CTTGACAGCG AAGTGAGAGA 
    ATGACTTTAT TGGTGTCCCT GGAGATGGTT AAAGGTGTGA GAGGCTGCTT 
    GGTGATACCA CCAAACCAAG TGGAAGTAGA AACCAAATCA ACCGAGAAGA 
    TCCTCTCCCA TGTGTTGTTA TCTTCAACTC TCCATCAAAA CTCTTGCTTG 
    CAATCTTTCT TCACCTCTGA ATACAGAGAC GACCATCAAG ATTGCATAAC 
    CAATCTTGTC ACCAGANGCA TCACGGGTAA TAAANGCGGG GTTGGGATGA 
    CTTGAACATC TCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 422677 [Map]; Strand: c
      • AT5G02130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -645; Region: promoter
      • AT5G02140.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -707; Region: promoter
    Flanking Genome Sequence: 53-4188-1 - 3-prime edge 
    TTTAGGGCNN CNGATGTTTN TNCNCCCNTC CCGACCGGGT TCATCCCNGC 
    CATTAACTAN CTCTTNNAGC NNTNTNNCTT TCNCACNGAC CGTCCNATNN 
    CCTGCAANTC AAGNAATGTA TTGNGACCAN TCTGACNTGT TTANCGTTAG 
    AGCNTGNCAC TCANCNTAAG TGGTCCAGAG GAGNNATNTT NGTANNCNGT 
    AGNCAGTATN CTGNCGANTA NNNNCGATGG NAATGGACCT GTNNNNAACC 
    CNGNTATCGG NNTNNGGTTT CTNTCGAANA GATCACCATG CCCGGGCCNN 
    AGATCACTAG CTGCNGNCTG AAAAATTAGA ANATGGATTG TCNAGTATNN 
    NCCNNNTCNG CCTTANAGAA ATGCNNTGAT GAANAAATCT ATGAGTGTTA 
    ATCTTTATCC AATAATANAC GTTNGAGAGA CATANNNNTC TTTNTCTTTT 
    TCTTNNNATN NAACTTNAAC CCATTCCTTC CTNGATGNAG NGCGTCNTNG 
    ATCNTAGGCN CTCNATNTCT NTTNTNCTNT GCNGNNTGGT TCCCATGGAA 
    AGGNTCAGGT GTTNGNANNC ACNGTTNGCA CCTNNCCNGT TTCCCTATAC 
    NACAACNGCA CCTTCGCCCC CACCCAATTG NGATGAGNTT NANANNCAAN 
    ANANTACNCC NTCNNGGCTN TAGACCANNC ACTCTNCNTC CNCANNTACN 
    NGNTNNNTNN NNANTNTTCT TNNANNNTTG NNCCNNCTAC NCNCATNCCN 
    NCGCNNNCCT TTTACGNNNN GGTNGNTATA CNNTCCNNNC CTNNTCTCAC 
    NCTNNNNNCN TTCATNCGNT NNTANTCAAT TTNGTANGAT NNNAGACTTG 
    CANGTCTNGT TTGCNTNNTT TNTCTGAANN NNNCAAGNA

AT2G02030.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G12870.1); Has 1703 Blast hits to 1685 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02040.1

Model type
Protein coding
Short Description
peptide transporter 2
Curator Summary
Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
Computational Description
peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
mutant has Growth rate reduction, increased salt sensitivity; Putative Kinesin Light Chain
Computational Description
NDP1; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 225 Blast hits to 173 proteins in 57 species: Archae - 4; Bacteria - 100; Metazoa - 49; Fungi - 9; Plants - 38; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02140.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.2); Has 1588 Blast hits to 1558 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 96; Plants - 1388; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR