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53-4207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30387452 [Map]; Strand: c
      • AT1G80850.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4207-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGACG ACCTTAATTT AAGTTTGTAA ATGCAGGTCC 
    TTTCTTTCTA GGGTTTATCG AAATTGGTGT AAATCTTTTG GAATTGGTTT 
    GAGATTTTTT CTTTTGGGGA ATTGCAATTC ATTAGTCGTC GTGATCCAGT 
    GTGTTTTTAA GTGAAGTAAG GCATTTTCGA TATTCGGAGA CTTTTAGGTC 
    AATGTCGGCT CCACCGCGAG TTCGGTCTGT GGATTCATCC GACCGAGAAT 
    TCAGATCAGT TCTTGGTCCC GCCGGCAATA AGCTGCAGCA GAAACCGTTG 
    TCAAAGCCGG TGAAGAAGCC TGTGGCTGAG AAAACCAAAA ACCTAACCTT 
    TACGGAGAAA ATGCCGCAAT GCTCGCCTCT AAGCCCTCCA ATTCTGAGAC 
    GTAATGGTAT TTCGATGACT GCTTCGTATT CTTCAGATGC GTCGTCTTCT 
    TGCGAGTCGT CGCCGTTAAG TATGACGTCT ACTTCGAGTG GAAAGAGGGT 
    TTTGCGGCGA AGTGGGTCAG TTTCTTCTTC CTCTTCACTG AGAAGAAATC 
    TGACGGANGA GAGAGATGAA AAAGCTAGTG ATTGCTTCTG TGACAGNCGN 
    AAAANATNCG CTTGGATCAC CCCTAANTCT GGTNATACAA TCTNTCTTGA 
    NNCATNCATT TCATTTTTTT GNTNGNATAC AATTGGTNCC ACTTNTNANN 
    ANCTCTGANG NANTNCCNTA NACNANTGAT GCTTNGGGCT TTACCGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30387504 [Map]; Strand: c
      • AT1G80850.1 - [+] show detail - DNA glycosylase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4207-1 - 3-prime edge 
    GTCGTCACCT AAACTTCTTC TAGCGAAATC CCAAAGTAGG ATCACGGGAA 
    TGAGTAAGGT TTACACATTC ATAAGAAAGT GAAGATACAT ACAAAAGACT 
    GATCTTTGGA AATTTAATGA GAAAATCCTT ATTCTTTTTT TTTTACTTCG 
    GCGANCCCAA AAAACAAAAN TAAAGAGACG ACTTTTCCGA TCGANAACNA 
    TNGGAATCCG GANCGAGTAA AGANAANAGT CCCAAGGAAN AGTTGTTGTA 
    NTTAGCCAGT CACAGTTNGA CNCGTNATCG TTNGGTTTAC CCGACCCGGA 
    AAAACCCCGG GTTAAAATNT AATTANCCAG TANGGACTGT TTCAAGTTTN 
    AAAACTNTGG GTNTTNTTAA CTNTTAACCC GACAAAGCCA AACTAAAAAT 
    TAGTNGCTNG CTTATNGCTT AATGATTNCT ANACANATTA GGAATGTTTT 
    GTNTTNTATC AAAACCATGC CAANACAANA GATTTAATTA CNCCATAAAC 
    AAAACTTTTT NTTTCGTACT CGAGTCCCCA CATTTTGNGT NTTTACGTAN 
    ATTTCACATA GTTTTGAATA ATGACATATT TTTCCCAAAA AANAATAATT 
    ACATATNTTC CCGATNTTTT GGGGTTTATT ACANATTTTT CCTATANATT 
    NGNTTATTGC AATCGCTCCT TAAAGNNCTG GTTATTACAT TTGGTTCCAT 
    TAGTTTTTNT TATTACAATG GGCCCTN

AT1G80850.1

Model type
Protein coding
Short Description
DNA glycosylase superfamily protein
Computational Description
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR