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53-4210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24235668 [Map]; Strand: w
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4210-1 - 5-prime edge 
    GGTATAAACN NACAAAATCG GTTATNNTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AACTTNTTTG TCCATCACGA TAGCTACATG 
    GGAGTGAATA GATGGAGCGC GAAACAGCTC TTCAAGGCGG TTTCTCCGTT 
    TGTGTCTAAT GGAGATGCAT CATACAAGGA ATGCACCTGA TACACCACAG 
    CAAAAGAATG GGTACGACTG CGGTGTTTTC CTTCTTGCTA CCGCTCGGGT 
    AATATGTGAA TGGTTCAGCT CTGGAGGANT GAAGAACCGG GATGAGCTGT 
    GGTTTGCTAA TGTGAAGGAG ACTGTACCAG ATCTGGTTAA CCATCTGAGA 
    GAAGAGATTT TGGCGCTGAT CAAGAAGTTG ATGTCTGAGA GTGTGAGTAA 
    GTGAGAGATG GTTATTGAAC GTGGTTAGAT ATNCCGGTTG GATGATTTTA 
    ACTNTTTTCC GGAACTTCAA ACAGNCGATA TTTTAACTCG GTTNTTGAAG 
    TCAANNTGTT NTACTCTCTT NTAACTGGTA AAGTNATANC ANGGACTACT 
    ATTTTGAGCC CCATTGCTTN TGNTTGAGTC NAGGCTCCAA ANTTCGGTNN 
    ATNTGTTAAT AANNGTTNNA GTATTATANG GCCNACTAAA CANTNTNNCG 
    NCNCATNCTN CTTTTNTNGA CATGAANTTG NNTGNAANAG TGNTNNANCA 
    CATAAATAAA AAGTNNTNTA ATNCTGGTNT ANTGCAAANT NGNNANATCT 
    NTCTGNNNAA ACNNAATCAN ANNNGCGTTT NTGCTCTTNT NNANTNNAAN 
    NTNTNNGNCN NAATAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24235661 [Map]; Strand: w
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4210-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGG 
    CTCTTTGTAG TACACGAGTA AGCTCCAATG TAATCCGCCT TCTGCTACCT 
    CGACATTTGA ATTGTCGTTT ACAGGGAGTA TCAGGAGGTC TTTGTCGCGC 
    AAATTAAGTG GTTTCATGAA ATCTTTGAGG TATTCGGTGT CCGGGCAGTT 
    TGAGATCCAG AAAGCAATGG AGGGAGGGAT TAGCGAGATG GTAGTGGAAC 
    TGTGAACCGT GGATAAGAAG CTAAGGTAGA ACTCGATAAC ACGATCGTTT 
    AGAAAAATGG GTCCGTTTAG GATGTCCAAA TCTGATCTCC TGAGGACAAC 
    ATCTTCATAG CTGAGGATCT TGTCGTCATC AGAAGTATTT CCCATAGCGT 
    ATACTGATAA GCT

AT5G60190.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Curator Summary
Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR