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53-4213-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30216691 [Map]; Strand: w
      • AT1G80370.1 - [+] show detail - Cyclin A2;4
        Distance: 0; Region: exon10 (CDS)
      • AT1G80380.4 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -425; Region: promoter
      • AT1G80380.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -528; Region: promoter
      • AT1G80380.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -528; Region: promoter
      • AT1G80380.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -528; Region: promoter
    Flanking Genome Sequence: 53-4213-1 - 5-prime edge 
    CACGCCTTGC AAGATTTACA GCTTAACACC AAAGGATGTT CCTTAAACTC 
    TATACGCATG AAGTATAGAC AGGACAAGGT ATTAAAAAAT TATTAATCTT 
    AGTTTGGTTT TCTTAAACCG AATGAAGAAA TCTGGTCTGT TTCGGTTTAA 
    CAGTTTTTTT TTTTTTTNGG GAANTTANNN NNAAAAACCC GGGGGGGTTT 
    TNATTTNGGG NNNNCCCCNG NNNAACTTTT TTTTTNNNNA CCCNNTTNAN 
    CCCCNAANTT NNNNNAANNT TTTTTTNGGG GGCCNNANTT NTTTNNNNNG 
    NAAAAAAAAA ANGGNTTTNC CCNGGGNTTT TTTTTTTTCC NAAAAACCCG 
    NTTTGGGGNT NATTCGGNTT AATTNGAAAA NGGGTNGGNT TTTTTAAANC 
    NGNNNTTTTT TTTNGGGGAN NCNNAATTNN TTNGGGGGGN NNGGNNNTTT 
    TTCCCCCGGG TTNTTNANGG GAAANNTGGG GNNGGNTNAA AATTTTTNTT 
    TTTTTTTTTC CGGGGGNNAN ANAANCAANC NTTTNTTNCC CCTTTTNCCC 
    CGGGAAAATN GGGGCCCCCC NNTANNNNGG GNAAAAAATN NTTTTTTTTT 
    TTTCCAAAAA CCCNTTTTNA AAAATTTTNN NGGGGGGGNT NNTTTTCCCC 
    CCNNNGNGGG GGGCCCCCCN NNNTNGGNAA NNNNNNANNT NAAAAAAAAA 
    NGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30216627 [Map]; Strand: w
      • AT1G80370.1 - [+] show detail - Cyclin A2;4
        Distance: 0; Region: exon10 (CDS)
      • AT1G80380.4 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -489; Region: promoter
      • AT1G80380.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -592; Region: promoter
      • AT1G80380.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -592; Region: promoter
      • AT1G80380.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -592; Region: promoter
    Flanking Genome Sequence: 53-4213-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGAAGGCGTG GACAGATGCT TTGAGATCGG AGGCTTTGTA CGTTGTGTAA 
    TGCTCAAGAG TTGGATTCTG TTCATAAAAT AAAGTAAACA AGAGTGAGAT 
    TCAAGATTCG CTGTGTTTCT TAATGAAGAA GATAGTTGGT CAATTACAGA 
    CCCAAGGGTG GCTTGATTGG TTTAATGTCC ACTTGGCAAG AAAAACAGCC 
    GAAGCAGCGA TGATCGAAGG AAGGAACTTC AAGAAAGGGT AGTCCATTAA 
    CGTCAATTCC GTTAGGTAAT TCGCCAGAAA CTCCATTTCC AGACTTTGAT 
    TCTGCAGACA AATTACCAAC AAAGTTTCAA TCTTTCTGCT ACATGTTTTA 
    TGAGCAATAG ATATATCTGA TCTGATAAAA GAAAAGCACA TTACCGGGAA 
    AGAAACTTGA GCTGCTCGAA GAAATCTCCT GCAAAAATGA ATGAATACTC 
    TGAATCACCA AAGACTAAAA AGCAACAACA CATGATAAAG CATTTGCACT 
    GTCTGGTAAG ATTACCTGAG GAATGTTTTT GAAGTGGGGG TGTAAATTTG 
    AAAGCTAAAA TGCTTGANTA CTTGGCTCTC CATTTCCANG ACCTGATCTC 
    TTGTNTAANT GTNATNNCGG GATGAAACCA NAACTCCTNA ATGCGTGGCG 
    CATGGATTTC CTCATACTTN CTGCAANAAC TNTTTANATG NNGGGGNNNN 
    ACCAAAACAT ATTTNNTTTT AGGTGGNNNA NGA

AT1G80370.1

Model type
Protein coding
Short Description
Cyclin A2;4
Computational Description
Cyclin A2;4 (CYCA2;4); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCLIN A2;3 (TAIR:AT1G15570.1); Has 4103 Blast hits to 4099 proteins in 369 species: Archae - 0; Bacteria - 2; Metazoa - 1911; Fungi - 542; Plants - 1008; Viruses - 34; Other Eukaryotes - 606 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80380.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80380.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083); Has 1396 Blast hits to 1392 proteins in 215 species: Archae - 0; Bacteria - 214; Metazoa - 0; Fungi - 146; Plants - 53; Viruses - 0; Other Eukaryotes - 983 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80380.3

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083); Has 1394 Blast hits to 1390 proteins in 211 species: Archae - 0; Bacteria - 214; Metazoa - 0; Fungi - 140; Plants - 53; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80380.4

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR