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53-4215-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10520 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -156; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -65; Region: promoter
    Flanking Genome Sequence: 53-4215-1 - 5-prime edge 
    CTACCACACC AAGAGTCGGG AGTGCGGAAA TTTTATTTTT ATATTTTCTG 
    TTTTCTTTCC CCCCAAAACC ATCACCAAAA AACTAAAAAG TTAAAAGACG 
    GCGGGAAAGT TGAAAACGAT TTGGGCCGAA ATTAACTTTG GGCTTGGTTT 
    TAACGACATA ACGTCTCAAG ACAAGTGAGT TAATGCCACG GCCTTTTATT 
    GAGGTAAAAA AGGCACGAAT GCTAACCGAA AATCGTTCCC AAACAACAAT 
    TGCTTACCGT GGGANAATTT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10443 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -79; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4215-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGCA 
    ATTCTGAATC GCGAGGTTTA GTTCTCCGGC TGAATCAGAG AACGACGAGT 
    CGGAAAAATT CGAAACTCTA GAACTGAATA AATGTCGACG TGGCAATTAT 
    TTCCCGATTC CAGCGGCGAT GGTTTCCGGT GGGAAGTCGC TGGCCGGATT 
    CTTCAGTCCG TCTCGGATTC TACGCCAACC AAGGCGCTCG AATCGACAGC 
    TCCTCTACCT TCTATGGCCG ATCTCTTGCT CCAAGGTGAT TCTTCGTTTC 
    TTCCTTTTTT TGTCGAATCG TGTTTGTCAT GTGACTCAAA GGAGATTGAA 
    TTATTATTTG ATGCTTCAAG GATGCTCGAA GCT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR