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53-4220-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215069 [Map]; Strand: w
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4220-1 - 5-prime edge 
    AACCTCACCA CCACATTTCT TAAACCCTAA TTTCCAAATG TTTCCAGAAA 
    TGCTTCTAAC GGTTACAGTT TTAGGCAAAG ACTTTGGTAA ACAGCTGTTG 
    AAAGAAATGG GTAGTACCTT GAAAAGTTTC TACAAATTTC AAGCAACCAG 
    AAAACAAAAA ACAGAGTGAA GAGAAGTGTG TTTTATTACC AGATCATCAC 
    CGGATTCACT AGGAAGGTAC GGTTTAAAGA ACTTTGAAGT AAAACCATTA 
    GAGTAATTTC CTGTTCCAAA ATAAGAAAAG GAAGAACATC AATGTACAGA 
    GCACATTACA AGGGAAGAAT CAGGAACAGA GAAGTGAAAA ACCTCTTGTG 
    TTCATTGTCG TCAACTTCTT GTGCTCTTGG AAATACTCTG AACCCTAATT 
    TTGATCGGAA ATAAAAAGGT GAACAAAGTT TCTCCAGATC CAAGTTTTTC 
    CAGATGTGAT TTGATCTAAA GGTGTTGGCC TTTTGTAGCA AAAACTTGCA 
    AAAACAGAGG GTTCTCTCTG TTTCGATGCT TTTTCCTTCA AATGGAAAAC 
    AAACCATTAA TAGTACTCTT CTTATTCAAA AATAATTCGT TAAGCGGACC 
    AAGGTATCGC TAAGGCCCAA ACAAAAAACA AGAAATGGGC CTTAAGTTTG 
    GTTCAATCTA TATCGTGTAA TGACATTATC GTCCTTAACA AAAGAACCAC 
    AGTAAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24214953 [Map]; Strand: w
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4220-1 - 3-prime edge 
    GTGAGGTTGA GAGATTTGTT ATGGTTAGTG GTTGGAAGAA GATTGTAAGG 
    GACGAAAACC TGAACGGTGG AGATCTCTTG TCATTTGAGT TTGATGGCTC 
    TCATTTTTTT AATTTCTGTA TCTTTGACCA TGAGACTACN GTGTAAGAGG 
    CTTTAAGAGA AGTTCAGAGC AAAGCAAGGA CATCATCAAA GTGGGATCTG 
    ATTGTGAAGA AGAATCTCAG GCTAGTGATG ATGTTATCGT TCTTAATAGT 
    GATGATTCTG ACGATTCTGA TAATGATTAT TCTGTTGAGG ATGATAATGT 
    TGCTGAGGAT GATGATGGTC TTGAGGATGA AGTAGATGTT GAGGCTGAGG 
    ATGGTTATGA TGCTAAGGAT AGTGATGGTC TTGAGGATGA AGATGATGAT 
    GAGGCTGAGG ATGGTTATGA TGCTAAGGAT GATGATGGTC TTGAGGATGA 
    AGATGATCTT GAGGATGAGG ATGACGAAAG GCGGTATCTG GATGATCACG 
    AGAACCCGTA CTTTACTATG ACACTCAATC CGAAGAAGAA GAGCCAATTG 
    GTAAGAGAAA AAAAAACCTG AATATTTAAG ATCTTTACAC ACTCTCCATT 
    TAACATCTTT GGTTATGGAT TCTTATGTGA ATAAATTAAT AAGGAATATC 
    TCAATCTGTT TTATGATGTT NGNTTCTTGA TGCAGCACAT ACCGGCTCAT 
    GTCATAAGGG ACTATGACTT AACCTTNCCG GAGCG

AT5G60140.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR