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53-4221-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20179210 [Map]; Strand: c
      • AT3G54500.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -183; Region: promoter
      • AT3G54500.4 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -183; Region: promoter
      • AT3G54500.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: -228; Region: promoter
      • AT3G54500.2 - [+] show detail - BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-relate...
        Distance: -230; Region: promoter
    Flanking Genome Sequence: 53-4221-1 - 5-prime edge 
    GGGATAAACN ACAAAATCGG TTATACTGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAT CCGATATAAC ATGAAAAATA TTAAAAAAAC 
    GTCAACAAAA GACCACAGCC AGGGAAAGTC AAAATGAGCT GTCATGGAAT 
    CAAGTCGTGT TTACTCTCAG CCACATGTTT AGATACGGCC TTCTCGTCTG 
    ACGTGGCAAC CCGTTCTCTC TCAGCCACTC GTTTGGCACG TGACCATTTC 
    ATACAAAAAA AAACTCTTTT TTCTTTTTTC CACTGTAACT CCTTTCTCTT 
    CCCATATCCT TTGAGCACNA AGGAGGATTC TGCTGAATCA AGGTTTTTCA 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24332454 [Map]; Strand: c
      • AT5G60520.1 - [+] show detail - Late embryogenesis abundant (LEA) protein-related
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4221-1 - 3-prime edge 
    ACANNAAACA NCNCCGNGNG CATTGGAANN GGTNGGANGN ATTTTTTTCG 
    ACCGTTACCG ACCGTTTTCA TACNNAAAGA TGNCATAANC GGTNTTTTTT 
    GCTTTCCTAN CTNTTCAAGA ACAAAAATCA ACCATATTAG TAAGNGTGTT 
    ANGAAATCTA ACAGTTGACA AAATGTTACA AATATAATTG AAAAATACAG 
    AAACATGCAT TATGGAACTT TTAAAATGTG CCAAAATGTN GAGATTTTGA 
    GACTNACATT TGCNGGTGAC TTCACATTTG NTGCTACAAT CGATGAAACN 
    AGCTACCAGC CNGGGCCAGT NGANNANGCN GTGCCNTAAN AAANATTCGN 
    ANAATATANT TNACCNANNN NNATAGNNNN NGNCTANNAA NNNNANANAN 
    NNCNACCCTT NTTNNNTTNA GTCGANTTCN TANTTANATN ATNNTAGTAG 
    NNGNAGANNN NATNNANANT TNTNTNTNGA TANAGGNNNN ANGACNNGGG 
    GGNNNNNTTN NNGGGNACNN CGNGTNNTNA NGTNNNANNT CCTTCNTGCA 
    GTAATCGTCN TGCGNAGNTN TNGNGNTTAG TNNTANTNNG NNCNACNCAN 
    NNGGTANGGN NGANTNTNGN NATNTNCANT NTCNANGNNT ANAACGTNNN 
    AANGGTNNAN GNNNGCGNAN NNANGNNNNA TGNATGNNAA NGNAGAGGNG 
    ATNANNNNCC NTTNTAGANG NNANNNNAAA NGAGANGTGG GNGNNNGNCG 
    GGNGCANNNN GNNATTNTNN ANNANAAATA ANGTNCNNNN NANCNGTCTC 
    CTNNNNNAAA TANTACNGTN CGTGNNTTAG ACGNNCNATT ATNCNGNNNN 
    NCNNNATNNN NGTTNCCCAC NNCANNTNNG NCNNTNTNAN ANNNATCAGT 
    ATNTCGGGTC GGNTCGNNGN NGTGN

AT3G54500.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.2

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54500.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1).
Link
InterPro Scan - TAIR

AT3G54500.4

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.2).
Link
InterPro Scan - TAIR

AT5G60520.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) protein-related
Computational Description
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR