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53-4223-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24332473 [Map]; Strand: c
      • AT5G60520.1 - [+] show detail - Late embryogenesis abundant (LEA) protein-related
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4223-1 - 5-prime edge 
    TTCGACCCGA GGANAAAATC GGTTATATNA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TNACTTNCCG AGATNTGNGG NAGGAGATGG 
    AGGGANGTTC TACTTCCACG GAAACAAAGA CNGGAACTNC GCCATCGGTC 
    TTTGACGAGA ATCTTNAAAT CAATGCACAT TTCATTGGTA CAAGACCTGC 
    TGGTAGAACC AGAGACTNCA CATGGGTTNA AGCCTTNTCA GAGANGTGNG 
    ATAGNCACAA CCTCGTCATT GCAGCCAATT TNGTTGNGTN GGTGGGATGA 
    TNCCNTGACT CTCTCNTGGT GAGATGGNAC GGCNAANAAG TTGANGTCCC 
    NNCNGAACGT GAAGGAGAGT GNAGANNTGA TCTTGATGAA AGGGAAGATA 
    TTGCTGATAG AACAGATGAC AGAANTANCG CGGNGAGCCA CGGNATCTGG 
    GATCGATCAG ATAGATANTC CTGGTTNNAC CAATNGNGAA NGAAGANNAN 
    NGNNNCNCNT AANTNTCNGC NTCCTAAAAG ATGATGCTTC NTGCTCATNT 
    ANAGACTNGN GCNCNAGNCC TTTNACCCGG AGCNGGTCCN NGTNNAGGGC 
    TGTNATGGGG AATATCNNAG GGTGCNGNAA CCGNNNNNGC CANCGTTAAG 
    ACCCGNANNN CCNTANNCNC TNNGGANNGG GGGGAANAAG GACATGTANC 
    CNAGATTCCN NNTNTAGTNT CTGNCCCNTC NTGGNATNNC NAGNCGNGCC 
    TCAANGNNNC ATACGTGGNN CCNGGNNGCG GNCTNACCNT NNTNNCATCN 
    AANNTAATTG NGCAANAANT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24332479 [Map]; Strand: c
      • AT5G60520.1 - [+] show detail - Late embryogenesis abundant (LEA) protein-related
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4223-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    CAAAGATCCA TAACCGTTGC AGTTTGCTTT CCTCCCTATT CAAGAACAAA 
    AATCAACCAT ATTAGTAAGT GTGTTAGAAA TCTAACGTTG ACAAAATGTT 
    ACAAATATAA TTGAAAAATA CGAAACATGC ATTATGGAAC NTTTTAAAAT 
    GTGCCAAAAT GTTGAGATTT TGAGACTTAC ATTTGCAGGT GACTTCACAT 
    TTGCTGCTAC AATCGATGAA ACAAGCT

AT5G60520.1

Model type
Protein coding
Short Description
Late embryogenesis abundant (LEA) protein-related
Computational Description
Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT5G60530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR