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53-4224-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11189310 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -4796; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 1233; Region: intergenic
    Flanking Genome Sequence: 53-4224-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGT ACACCTAGAT GTATTTGTCA AACTCATCCG 
    AAAAACATCC AAAAATTCTG CAAAAATTTG CAAATGTCCA AATTATTCTC 
    AATTACAATA TATATAAAAT ATTGTTAATT TCTCATTTTA TATTTAAAAA 
    TTACATATTT CCACTAACTT TTTTTTAATA TCGTAAATAA CAAATTATCA 
    TTTTCTGTCA AAATTGCAAA CTTACGTTTT TTATGAAAAT TAAATTTACT 
    TTTTTCTCAT CATTGTTTTT GCCTAATTAT GATTTTGCGG AAAATTTGCA 
    AAATAACATT TCAAAAAAAA ANCCNCNATT TNGGNGGAAA AATTNCCAAA 
    TGGGTTTNNG NCAANACCAN AAAAATNNGA AAATNGNGTT TTTNGNCAAA 
    NCCCCTAANG TCGNANTTTT NGCCAAANCC GNANNATNGN ANTTNCCNGC 
    CAAANCTNTN CAATCNCNAT TTTNGNGGAA AAATTNCGGA TTGGGGTTNC 
    CCGCCAAAAT TAAANCATTC AANNAATTAC NTTNTTTTTN CCAAAACCGT 
    AACATCANGT TTTNTTACCA AAACTGCAAT TTCATATTTT CCGCCNTAAC 
    CGGAATATNA TACCTTTCCA TTAAATCATG TTTNNTGGAA AAACCACAAA 
    ATCCACNTTT TTNGGCAAAA CCCAAAAAAN GATTTTTTTT TTTTAAAATA 
    ATAAAANGAA AATTTTTTAG NGGGAAAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11189281 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -4767; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 1262; Region: intergenic
    Flanking Genome Sequence: 53-4224-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGC 
    CGTCTAGGTG GTCCATTTGG ATAATGTGTT TAAGTGCACT AAACGAAATC 
    ACCTGAACAT AAAAATTAAC GAACATCACA AGTATAGGAA AGTCTCTAAG 
    ACGTAAACTC CATTGTGTTA ATGAGAGTTT GTCTAAACAT TGACGAAGAA 
    AGTACAAATA GCATGCAACC TGGTTTGCAA AAAAAAAATG AAAGAANAAA 
    AAGAANAAGT TTGCAGCCTA GTTTGANACA AATTTAGTTC TAAGGNGAGG 
    CAAAAGANAG AGATNTAGGA NATTTTCAAC TNTNTCGATC AACTACAANA 
    ACCATAGTAA TAGCNCGTCA TCCATTGGAT TATGGAACCT ACNTAAAANA 
    GGGATGCANC NCGAGGACTT CCCGGGAGGT CACCCATCCT AGTACTACTN 
    TCACCCAAGC NCNCTTAACT GCGGAGTTCT GATGGGATC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR