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53-4225-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203314 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 377; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4375; Region: intergenic
    Flanking Genome Sequence: 53-4225-1 - 5-prime edge 
    CTTGTCACAA GCCCAAATTC CATAAGAATC TGAGCAATTA GTCTTGAAAC 
    CTTCCTACTA GATCAATTAT TCAGGATAAA AGACTTCATC AAAATGTAAT 
    ATACAAATCA CGAAGAGCAT ACAGCTTATA CTCAGATAAC AATCTTATCA 
    AGATAGATAC AAATGTCTCA TAGCCATCAG AAATCTCTAG ATATCACAAA 
    CGGATCTTCC TGCTAATGGT TCTAGCAGAA ACTTTTTCAC ATTAACGAAA 
    AATAACCAAA CAAACTAATG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203260 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 323; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4429; Region: intergenic
    Flanking Genome Sequence: 53-4225-1 - 3-prime edge 
    GTGACAAGGC AGCCATACAA TGGAATGGAA GGGAAGCTGC TTCCTTAACT 
    GAGCAAGGTG CGATTTTATC TTTAGTGCAC CAAATATGAT TTACTTTTCT 
    TTCATAAGGT GTTGATGAAG TTTGCAATGT GTATTCGTTT ACAGCTCTCG 
    ATTTAGGTTT GTTTTGTTTT CAGAAATAAG AACACAAGAA GAAATGTATT 
    AGCCAATTTC GTTTTTCAAA TTGTGTAAAC TCTTCTTCAT AAGAACTCCA 
    ACTTTACAAA ACAAAATAGT AGTTTATGAC GAAACACTTT TCTTACCAGA 
    GTTATGTAAC TACATTGAAC ACCGGAACAA TTAAACTATT GTAAGCTGGT 
    TTGAAAAATA AACACAGAGT TATAATCAGC AACGAAGCCT AAATGAGTCC 
    AANATGTTTG CAATGTTGCT TCCGTGAGAT C

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR