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53-4235-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19638820 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -142; Region: promoter
    Flanking Genome Sequence: 53-4235-1 - 5-prime edge 
    GAAATAAGGA TTGAGAAACT AAAAAAATCA GAAGAAGAAA GGAAAGGAGA 
    GAAGAGATAA ATTCGTTTAG TTTGTCCAAG TTAAATACGA AGGTTAAGGG 
    CTTCAGATGC CAACAAATTG GTAGGCCCAA TAACATAATA AACGAGGCCC 
    AAAAACTTCA TTTGGATACT TACTTATCAA ATGTCTTCTT CGCCATTCTC 
    TGCTTAAACC CTAAACCAGC CTCCTTCTCT CTCTCTGTTA GCTGCGTTCT 
    TCTTCAAGCT AGCTCTCTGC TTGTACTCTA GAATAATGGA GGAAGAGCTT 
    CGTGTTCGGC TGAATGACCA TCAAGTGTCA AAGGTTTTCC CTGTGAAGCC 
    CAAATCAACG GCGAAACCTG TTTCCGAATC GGAGACTCCG GAATCGAGGT 
    ACTGGTCCTC CTTCAAAAAT CATTCCACAC CTAATCTCGT CTCCTCCGTA 
    NCCGCTTTGG CTTTNTNTNC GGTCCACCCT NACTNCTTGG NCGGNGNTCA 
    CTCCNNCCCG NNTNNCTNTT TTNCTCNCAN NNNNTTTNCT NCTNNCNNNN 
    NNNNNCNTNN NNNANNNNNN NNNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19638936 [Map]; Strand: c
      • AT2G47990.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -258; Region: promoter
    Flanking Genome Sequence: 53-4235-1 - 3-prime edge 
    CTTATTTCTC TGAAAAGAAA AACCGAATTC CTCGATTCAT CCACAAGGAA 
    AGGTGATTCA TCAATCTTGT GCTTAACACA TAATGCATGT GGATTGATTT 
    ATATCAGGCN AATTGGAGAA TGATCAAGTA AGGAAGAAGT TTTGTATACT 
    GAAAGAACCA CAGAGTACGA AACTATTCAT CATGTATATC CAGAAGTAAT 
    GCGCAAAAGA GCAACTTACA ATGTTACAAT CAAAGACACA TGGATGCTAT 
    ACGCCAACGG AGACATTTCT GCTTCAATGG TTTGATTCCT TGATGCTATA 
    GGGTTCAAAT CGAATCCCTG GATGCATACA ATCCTTCCCA ACAAAATATG 
    CTGCTTGTAT TTATTCATAT CTCTCTCTCT AGTATCCTAT TTTCCCATAA 
    CTCTTTTACT CGCTTCAGGT CGTTGGAAAT CATGTCCATG CTTTAACATC 
    ATTCCTGCGA CTTGATTAAC CTTATGCTCC TGTCCATGCG TTGCTGCGTA 
    TACTCTAAGC AGAATACAAA GCGTCTTCTT GGACCGGCTT ATTTTAAAGC 
    TTTCCATTTC AGAGAGGACG TTTTCCATCT CTTTAAAACG CTTTTGAGAT 
    CCATACATGA TCATTAAGCC ATGGAAACAT AGACCTGCTC ATTTTNCATC 
    CAGCANAAGT TTGCACGCTG CACGAATTTG GCAAGCTTAT CAACCGCATT 
    GCACCTGAAG NNACTAGCCC CTATTGGATC TCATAATACC ATCT

AT2G47990.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Curator Summary
Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.
Computational Description
SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
Link
InterPro Scan - TAIR