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53-4254-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17853122 [Map]; Strand: w
      • AT1G48310.1 - [+] show detail - chromatin remodeling factor18
        Distance: 0; Region: exon4 (CDS)
      • AT1G48315.1 - [+] show detail - other RNA
        Distance: -995; Region: promoter
    Flanking Genome Sequence: 53-4254-1 - 5-prime edge 
    CATATGAAGA GTATAAAAAG GCAAACCTTT CTTTAGCATT CCAAATGGCC 
    TTAGGGATTT TACGCACAGC ATCCACCACC ACCTGGAAAA AGAAGTGCCA 
    AAGACTTAAC TACCAAGTAT TTCCCCACAA AGACTTGTGA CTTCTGTTAT 
    CTTACCTGGT TATATGGGAA CTTTGCAGCA AGAACTCCAC TAGAATGAAG 
    CAAAATTTTG ACAGAGACCT TTTGCTCTTG TGGCTTAGAG CCAGCATCTA 
    TTGGAACAGA GACTAGCACT CACAATTAAT ACAGTAAACG TGAACAACCC 
    AAAAAAACAA AGAGTAAGCA AAAAATACAT AGATGAATGG TACTGGAAAA 
    ATCAACAGAC CAGTGTTCGG TTTAGGGGCG AGAGTTGAAG GTAAGATTCT 
    GGCTCCTTGA GACGAAGTAT GAACCTGAGA ATAAGAACAC ACACATATAA 
    GGGCTTATTA GAAGCAAAAT TGCCCATTTA CAAACACTCT AAGCCATCCG 
    AAATCGCCCG AACTACCGCA ACAAAATCGC CCAGAGAGAG AGAGAGGGAT 
    TGCGGAAAAC CTCGTTGGGA ATTGGCAATG AAGAAGAAGA AGAGGAATTG 
    CGTTGCTGGT TGATTCTCTG AAGAGCTTCG TTTTCAATAG CATNCATCTC 
    TTCACAGTCA ATCCCANAAA TCATNCATTT TGATATTCCC TCTNCTCACT 
    TNTTNTTTTT TTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17853006 [Map]; Strand: w
      • AT1G48310.1 - [+] show detail - chromatin remodeling factor18
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 53-4254-1 - 3-prime edge 
    TTCATATGCA TGACTCATTT GTGTGTAGAG TTCTTTCTTA TTTCTAACAT 
    GCTTTATTTG ATCTGTAAAC AAAGCAGATA AATAATCCTT GGCTTGTAAT 
    ACGTTGTTTA TTCTCTTGTG GAAGTCCAGG TTATGGACCT TTCCTCATTC 
    TTCACNTGTC TTCAGCAGAA AATATTCTAC GAGAAATTTC CAGCGTTAAA 
    GTTGAGGTAA GCCACATTGA TTCGTTAAAA CTGCTTCAGA AAGTTCAGCT 
    TAAACTAGGT CAAGCGTTTC TTAGATACAT TTGCTATACA TTTTGTCCCT 
    TGAACTATCA GATAGAGAAC TTAGATCCTC TTGTGCAACG TGCAATAGCT 
    TCTGCCTCAA GAGTTCCGGA TCTACGGCGT AAGTCAGGCA TCCTGTTTAT 
    CACTTCATAA GCATTAGCGA CGTGATTTTA ACTAAAGATA TGTTCATTTT 
    TGGACCACTT TTAAGGGATT TTCATGTCTT ACTATCTCTT GTTTTCTGAT 
    TTCCCTAGAT CTGTATGAAA AGATACCAAG CCATATTGAG CCAAAGCT

AT1G48310.1

Model type
Protein coding
Short Description
chromatin remodeling factor18
Computational Description
chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G48315.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G48320
Link
InterPro Scan - TAIR