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53-4270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215350 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4270-1 - 5-prime edge 
    NGTNTTCGAC CCGAGTAAAA TCGGTTATAC GATAACGGTC GGNACGGGAT 
    AATCCCATCC TACTTTCATC NCANCNNTTT GAGGTTGTTC ACTACTCTGT 
    TCCTGATTCT TCCCTNGTAA TGNGCTCTGC ACATTGATGT NCTNCCTTTT 
    CTTATTTNGG ANCAGGAAAT TACTCTAATG GATTNACTTC AAAGNNCTTT 
    AAACCGTACC TTCCTAGTGA ATCCGGTGAT GATCNGGGAA TAAAACACAC 
    TTCTCTTCAC TCTGAATTTC GNNNNCGGGT TTTTTTNNNT TTGTAGAAAC 
    TTTTNAGGTA CTACCCATTT CTTTCAACAN CNGNTCACCA AAGTCTTTGC 
    CTAAAACTGT AACCGAAAAA AGCATTTCTG GAAACATTTG NAAATTAGGG 
    TTTAANAAAT GTGGGGGCGA GGNTGAGAGA TNTGTCATGG TTAGGGGCAG 
    NAANAAGATT GNAAGGNACT AAAACCTGAA CGGNGGAGAT CNCNTGTCAT 
    TTGAGTCNAG ANGGCTCTCA ANNNCATAAA TCCCGGNATC NNAGACCANT 
    NAAGNCTACC NGNANGAGGC TTNAAAGAAG CTCAGAGCGN AGGCACGGNT 
    CCTCNNCGNN GGTGGGATTN GGNNNNGGGA AAAAANAANN CCNGGGCTTN 
    GGGGNGATNN NNCCCNCCCT NNATANNGAA ATTTNNGACA ANGCCTAGAN 
    ACNNANCATC CCAGGTNNGG GNNATNANTC NACCNNNAGC NCNNNGNNNG 
    NNCCCGGANG GNGAACCNCA ACGNNNCNGG NGGACGATTG GNCAAAGTGG 
    GAANANANTA GGNGNAGCGC CTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215402 [Map]; Strand: c
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4270-1 - 3-prime edge 
    ATTGTCGTCA ACTTCTTGTG CTCTTGGAAA TACTCTGAAC CCTAATTTTG 
    ATCGGAAATA AAAAGGTGAA CAAAGTTTCT CCAGATCCAA GTTTTTCCAG 
    ATGTGATTTG ATCTAAAGGT GTTGGCCTTT TGTAGCAAAA ACTTGCAAAA 
    ACAGAGGGTT CTCTCTGTTT CGATGCTTTT TCCTTCAAAT GGAAAACAAA 
    CCATTAATAG TACTCTTCTT ATTCAAAAAT AATTCGTTAA GCGGACCAAG 
    GTATCGCTAA GGCCCAAACA AAAAACAAGA AATGGGCCTT AAGTTTGGTT 
    CAATCTATAT CGTGTAAATG ACATTATCGT CCTTAAACAA AAGAACCACA 
    GTAAAGAGTC GAGAAGGGTA TATTAGAGAA AGAAGGACTT GTGACATCTC 
    AATTCTTGAA CAAGAAACTT GAAACTTGAA AGAAGAATGA GATAGTGTTA 
    AGTGGCAGAG TTCCAAGTAT CTTAGTATTA TTCTCCTCCT ATGCCAATGC 
    TTTTCTTATG ATCACATAGA GAGTCATAAC ATTCTTTTTA TATGAACTCG 
    CAGGTTTTAA ACAGCCCTGA TGTGTGAACC ATTCATAATG ATTTCTCCCA 
    AAATCTATAG CTCTAGTATA CATTATTATT GTAAGACTGT GTTGATCGTC 
    TTTTGCACTT CATGTTTCAG ACAACAAACA AATCAAGAAG TGTATAGAAA 
    GCATCAACAT CGATTATGTT CCGAGAAACC AATAGATTCA TAAACC

AT5G60140.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR