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53-4272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23284139 [Map]; Strand: c
      • AT5G57490.1 - [+] show detail - voltage dependent anion channel 4
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-4272-1 - 5-prime edge 
    CTGTTAATAC TGTAGGGAGG ATAAAGGGGA GAGTCTGAGA GCTACTTACG 
    TCCACACAGT GAACCCAACC ACATCCTTTG GTGCAGAACT GATCCGTCGC 
    TTCTCCAATT ATAACAACAG CTTCACCGTC GGAAGCTCTC ACTCTGTGGA 
    TCAATTCACA GTGGTTAAGA CCAGATTTTC TAACAGTGGG AAAGCAGGGA 
    TGGTGGTCCA GAGAGAATGG AGACCGAAGT CGCACATCAC TTTCTCAGCT 
    GAGTATGACT CAAAGGCTGT GACCTCTTCA CCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23284253 [Map]; Strand: c
      • AT5G57490.1 - [+] show detail - voltage dependent anion channel 4
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 53-4272-1 - 3-prime edge 
    AATTTAACAG TCTCAATTAA GCCACAACCA AAAGCAGATG GAAAAATGGA 
    GCATCGTGTT GTTTCTTACA GTATGAGTGC AGCAGAGACG CCTTGGTTGT 
    TGAAACCAAT CCCTGCATTG TACTTTGTTA GTGATGATGA AGCTGTGTCG 
    AAACTGACTT CACCACCAAG GCAAACATTC TGGCTTCCGA TAGTTGCTGA 
    TAGATCTAAC AGAGGAGTTG GGTTGAGGCC AATGCTGGAA TTGAGCGTAG 
    CATGAGGATG AACATATTGC ACATCCAGCT GAAAACATAG CAAAGCCACA 
    AATTACTGAG TACAGAAATT AACAAACATT AGGGTATAAT ACTCATTTCT 
    CATATGGGCT ATGCACTGAC CTTGCCAGAC TTGTGATCAG GTATTTTGAA 
    ACTAATTACA GCTTTAGCGG ATGGCAAGAG ATTTTTGAGA GTTACTTTCG 
    TCGACACCTG CGTAAGATAT ATATGTTCAG TAATATGGTT TAGGACAGTT 
    AAGGTGCAAA AAAAATCACT AGAGAAATTT GCTTACACTA GAGTGGCTGT 
    CGATTTTCAG ATCAACAATG GTGTTTTGAC CTTTATATAG TGTGCTTATA 
    TCGCCAAAAA AGAAATCATC CTTCTTCAAA CCAGTAGCCA CAAATTTCCT 
    GTAGGAAAGA AAATAACATT GTGCAGTATA AAGTTAAATA GGTTTAAAGC 
    AGTTTAAGAA CATTAAGTTA AATAGGTTTA AGCAGTCAAA GAGCATGCTT 
    CTC

AT5G57490.1

Model type
Protein coding
Short Description
voltage dependent anion channel 4
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR