1. Home
  2. Mutant Lines
  3. 53-4274-1

53-4274-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1034812 [Map]; Strand: w
      • AT5G03860.1 - [+] show detail - malate synthase
        Distance: -242; Region: promoter
      • AT5G03860.2 - [+] show detail - malate synthase
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-4274-1 - 5-prime edge 
    TTTTTCGTCA CCATATCGTT TTCATCATCC AATACCTCTG GCTCTGCATA 
    AAACCTAAAA CAGTTTTAGT TGTCATGCAA ATTAGTTTAC TGATTGCTTC 
    TATTGGATGA TGAGACCAAA ACATCCTTGT TAACGGATTG ATTCAGATAA 
    AATCTAGGCA CTGTTTTGGG TTCAATCCAA ATGTTTTGAA ATTTGGTCTT 
    AAACTCTTTT TTTTTTTTTT TTTTTNGGAA ANGGGGGNTN AANCNTTTNN 
    NNCCCCCANT NNNAANTTNG NAAACCCNNN GGGGGNAAAN TTTTTTTTTT 
    TTNNNCCNNN NGNAAAAANG GNAAANANCC CCCCNTNGGG GGGGNNNGGG 
    NCCNNGNAAA NCCCCCCCCN TTTNNNNTTT TTTTTCCCCC CTTTNAAAAA 
    AANNNNCCCN GGGGGGGGGG GGNCCCNGGG GNNCCCCCNA ATTTGGGAAA 
    ATNNANANCG GGTNNTTTNA AANAAAATNN TTTTTTNGAA AAAAAACGGN 
    NTTTTTTTTN ANTTTTTTTT TTTNGGNCNG GGGNAANCCN NNTTTTTNCC 
    CCTTTNGGGG GGAAACCNNC CTTCCCAAAA AAAAAAAAAA CCCCCCNGGG 
    NCCCCCCCNN NNTTTNCCCC CCCCCNGNNN AANNNNAAAN GNNTNAAANN 
    TTTTNNAAAA NCNNNANNNG GGGGNCNAAN TNTTTNTTTC CCCCGGNTNA 
    AAANNAAAAA NNTTTTTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1034744 [Map]; Strand: w
      • AT5G03860.1 - [+] show detail - malate synthase
        Distance: -174; Region: promoter
      • AT5G03860.2 - [+] show detail - malate synthase
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-4274-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GAAAAGGATA TTATTATAAA TAGAAAATTT GTGATAATCC TATCCTAACC 
    GATATAGTGA CGAAAATCAT ACAGAACTTG GCACACTTTC CCAAGGAGGC 
    ACACATGTCA ATGCGTTTCA CCGATTATAC CTATCCATTT CCACCTTTAT 
    AATTCATATT ACACGATCAC ATTTATATAT CACGTTACAA AATTTAGACA 
    AAAAAATAAA TATGGAGCTC GAGACCTCAG TTTATCGACC AAACGTCGCC 
    GTTTATGATT CTCCGGATGG TGTGGAGGTT CGAGGACGGT ACGACCAAAT 
    CTTCGCCAAG ATTTTGACGA GAGAAGCTCT TAGCTTTGTG GCTGAGTTAC 
    AGAGAGAGTT TCGTGGCCAT GTGAAGTATG CCATGGAGTG CCGGAGAGAG 
    GCAAGACGGC GTTATAACTC CGGTGCCGTT CCTGGGTTTG ATCCTTCCAC 
    TAAGTTCATC AGAGACGGTG ATTGGAGCTG TGCCTCCGTC CCTCCTGCCG 
    TTGCTGACCG GAGAGTTGAG ATCACCGGTC CGGTCGAGAG GAAGATGATC 
    ATCAACGCTC TTAACTCCGG AGCTAAAGTC TTTATGGTCC ATTTTCTTTC 
    ACTCTCTCTT TATACAACAC ATTAGTTGGT TTGGATTGGA TTTGACCGAC 
    ATTGGTGAAA CTTTTGAATA ATACTGTAAC AAACTTTTAA TTGGACCGCG 
    TTCAATTTGG TATCAGTTAA ATTTGGGTTT GGTATATTTA T

AT5G03860.1

Model type
Protein coding
Short Description
malate synthase
Curator Summary
Encodes a protein with malate synthase activity.
Computational Description
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; EXPRESSED IN: seed, leaf; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03860.2

Model type
Protein coding
Short Description
malate synthase
Curator Summary
Encodes a protein with malate synthase activity.
Computational Description
malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465).
Link
InterPro Scan - TAIR