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53-4280-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410504 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -249; Region: promoter
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -616; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: -16; Region: promoter
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: -26; Region: promoter
    Flanking Genome Sequence: 53-4280-1 - 5-prime edge 
    CTCTGCTCTC CTCCGCCATT TTTTTCAATG GCTTATTATT ATATTTGACT 
    GGACAAAGAC TTCAATAATT TCATTTTATA TAAATTAGTT GGGAAAGTGA 
    TTATAATTGG GCTATATATT ACAAATACAT AATGGCCCGA AGGTGCTGCT 
    TTCTGGGCTA AGCTGTTTTC GGACTGTCCT TCATATTTTC ATATTACCAT 
    TCCAAAACGA CATCATTTTA TTTAACCTCG TCGTGGGTTT ACTTGATGAA 
    TTTTCAAAAG TTTTAAGGTT TTACATGAAA TACTATAATA AATGAGGGTT 
    CTGAATGAAA TTATTCATTA GTAAAACACC CTTTACACAA TTCTTACCAT 
    TCTTCGTCAG TCGATCAGAT CAACGTTTTA CCGTCTCACT GATCGACGGG 
    AAAGAGACGA CGACGTTTTA ACCTTTGGGT TGAGATCCGA TCCAATTTTT 
    CGGAATCGTG ATTCCTTGTT TGCGACCTCT CTTTCTCTCT GTTNACACAC 
    TCTTCTCTAA TCCCTCACCT CAAGGNATGC CTTCTTCTCT GGCACTGATT 
    ACAATCAAAT CNTCTTCTTC TCTTTGCGTT GCTTTTGCTG GGTTATTCGA 
    ATTTCNCGAC TTGGGCTCCT TTNTCTTTTG ATNGGAAATC AAATCCCGAN 
    TTTGGNGCCT ACTAGNNGNT TCTACTNNTC AACGCTCATT TGNNTGGGGT 
    CCATCATTCT NAAATNNGGT TTGGCNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26410620 [Map]; Strand: c
      • AT5G66030.1 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -365; Region: promoter
      • AT5G66030.2 - [+] show detail - Golgi-localized GRIP domain-containing protein
        Distance: -732; Region: promoter
      • AT5G66040.1 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: exon1 (CDS)
      • AT5G66040.2 - [+] show detail - sulfurtransferase protein 16
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4280-1 - 3-prime edge 
    GAGCAGAGTC CCATCATCGG TGTCGGTAAC AGTCGCCCAC GACCTTCTTC 
    TAGCCGGCCA CCGCTATCTA GACGTCAGGT AACGCCCCAC CTGTCTCTTT 
    TGACAATTTC AATCATCAAC ATAGCATCAT TAGGATCTTG ATGTAATGGG 
    GATGATGAAT ATAGGACTCC AGAAGAGTTC AGTCAAGGAC ATGCCTGTGG 
    GGCGATCAAC GTGCCTTACA TGAATCAAGG AGCATCAGGT ATGTTGTTAT 
    TTGGTTAGTT GGTAATTGAG TGGGGTTGTG ATGGATATAG TTTTGTGATT 
    GTGAAACAGG GATGTCAAAG AACCCCGACT TCCTGGAACA AGTCTCCTCC 
    CATTTTGGAC AATCCGACGA CATCATTGTA GGCTGCCGGA GCGGTGGCAG 
    ATC

AT5G66030.1

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), GRIP (InterPro:IPR000237); Has 226787 Blast hits to 107130 proteins in 3750 species: Archae - 2735; Bacteria - 54789; Metazoa - 91225; Fungi - 18234; Plants - 12767; Viruses - 906; Other Eukaryotes - 46131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66030.2

Model type
Protein coding
Short Description
Golgi-localized GRIP domain-containing protein
Curator Summary
Involved in golgi protein trafficking. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner. Localized to the golgi apparatus, tyrosine 717 in AtGRIP is crucial for Golgi localization.
Computational Description
ATGRIP; CONTAINS InterPro DOMAIN/s: GRIP (InterPro:IPR000237); Has 226693 Blast hits to 107013 proteins in 3750 species: Archae - 2739; Bacteria - 54726; Metazoa - 91166; Fungi - 18242; Plants - 12768; Viruses - 908; Other Eukaryotes - 46144 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.1

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66040.2

Model type
Protein coding
Short Description
sulfurtransferase protein 16
Curator Summary
Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
Computational Description
sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 254 Blast hits to 254 proteins in 60 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR