1. Home
  2. Mutant Lines
  3. 53-4286-1

53-4286-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11186793 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2279; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3750; Region: intergenic
    2. Chromosome: 5; Position: 11187295 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2781; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3248; Region: intergenic
    Flanking Genome Sequence: 53-4286-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACTGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC GACGCAACGC GCCCCACGTA CAGCCTCCCC 
    CTCCGCGCGC AGGATCACNA GNCNGGGCCT NGACCANGCG TAGCNCTATA 
    GAGAGCAGTA CTAGGATGGG TGACCTCCCG GGAAGTCCTC GTGTTGCATC 
    CCTCTTTTAT GTTTAACCTT TTTTTTTTNG GTAAAAANTT TNTNACTCNN 
    NAANTTTNAA ACCGGNNGGC NAAANTNGGN NNGNNANACC TTTTNGNAAA 
    GCCNAAAAAN AGCCNTCCNA NAAAAAAAGC NGGANAANGG AANTTTTCNN 
    TNGANTTTTN GTNAACCCNA AATTTNNACN TTNAAGNANT TTTTGGGGNN 
    TTTTNGGNAT TGGGGCTNTN TTANGGACCN AAAATTANTN GTTAAAGCNT 
    NGTTTTNAAA TTTTTTAANG CNTAAAAGCT NGTNAAAATN AAANGGGGTN 
    TCCNTACNTA GGGGGGGGNA CCNANGGGAA AGGGTTAATA ANGTTTTAAA 
    AAAAAANTNT NTNCAATGGC TTNGCNTNTN NTAAGGGNNG NAATNNTNCC 
    AGCNNTANNG CNCCGGATNA CNAGCCNGGG CNGTNAACNA CNGGGGCCNT 
    TTNAAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR