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53-4290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18764335 [Map]; Strand: c
      • AT5G46260.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class) family
        Distance: -977; Region: promoter
    Flanking Genome Sequence: 53-4290-1 - 5-prime edge 
    AAANNAANNT TTAAAAAACG GGNAAAACTA ACAAAACGGT TATACGATAA 
    CGGTCGGTAC GGGATTTTCC CATCCTACTT CCATTGGAAG AAGAGGAAAC 
    AAAGCAAAGT ACATGTATAT AGGTGTTATT AGATCTATAA ATGTACATTA 
    TTATTTTTGA AGAACTATAT AAAATGTTTC TTACATAATC CATTCCACAA 
    AAATTCGAGG AAGTCAAGTC AGGTTGGTAT ATGCCTCTGT TTCAGGCCCG 
    TGAAGCCATT TTTCGTTCTA TTGTGTATAG AAGAAGCCAT GCTTAGCTAG 
    TGGTGTTTTC TTAATCTTTT GTAAAATCGA TTTTAAGTAC TTTATCCAAT 
    GATATTTTGA GGACTTTTGC GGAATTAAAT ATCACATATC CAGGATTTTA 
    TTGAATCAGT CTCCACTTGT AATTTTATAC TCTAGACTTT TTTTTTTNTT 
    CNTTGAGTAA ATGTCGTTAN ACCAAAATTT AATNGATAAA TNGTAAAAAT 
    ATTAAATCCA NCAANAAAAT GACNTNTAGG NGGAAAANGT TTTAAAAAAT 
    GTCCTTGNGT CACACTCTTG CCTTCTTTNT TTTNATAANG GGGTTTNCGT 
    CTTCTTTCGT TCAAATTAAA TNTGAGTCGA GAACAGACCN CGACCNTANT 
    ANTNTTANTT TAAGNCCCTT TGAATNTGCC TAAAATTNCC AACCNTANTT 
    GCAACTTTTG CTTAGGGTTT CATTTTCCCA NTACCGATNA NAAATGAGTN 
    GCCTTNTTCT TTTTGAGTGC TTNTTANNGN NNAACTTCCA AAAACCTTTT 
    TTTNCATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18766058 [Map]; Strand: c
      • AT5G46270.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 53-4290-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    ACATAATTAA TGTTAACAAC ATAATATTTA ATCTAAGTAT CAAACATAAT 
    TTGTGAAATG TAAACAACAT TGATTTTATT TTCGTGTTAT GGCCGGATCT 
    AGTACTATAT AGAAGAATAT ACATCATATC ATGTACGAAT CGACAATAAT 
    TTATATATAT AAAAGTGTTA GTTAAAGAGG TTGGAGAAAA CGTTAAGTTT 
    AGAAGGTACA TACCTTCACT CCATCCCATT GTTTCCCATC ACTCTCTTCT 
    TTTGATAAGC TAAGCTCAAC AAGATTCTCG A

AT5G46260.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class) family
Computational Description
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46270.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 19108 Blast hits to 13517 proteins in 561 species: Archae - 10; Bacteria - 780; Metazoa - 1004; Fungi - 46; Plants - 16614; Viruses - 15; Other Eukaryotes - 639 (source: NCBI BLink).
Link
InterPro Scan - TAIR