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Mutant Lines
53-4293-1

53-4293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24000764 [Map]; Strand: w
  - AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
    Distance: -971; Region: promoter
  - AT5G59560.1 - [+] show detail - sensitivity to red light reduced protein (SRR1)
    Distance: 0; Region: exon2 (CDS)
  - AT5G59560.2 - [+] show detail - sensitivity to red light reduced protein (SRR1)
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-4293-1 - 5-prime edge
```
TTAAAANNNN NTTNAACCGG GNAAAACTAA CAAANCGGTT ATACGATAAC 
GGTCGGTACG GGATTTTCCC ATCCTACTTT CATCCTCTAT ACCAGAACTG 
AAAAAATGCC AGCTTGAATC ATGGAATGCT GCAAAATAAT CATCTGATTC 
CGTCTCAATA GCAAACTCGC TTGTGACTCT TTGTGCAGCT ATGATTCGTT 
TGGTAGCACA GATGACTTCT GCGTCAAATG AAACTTGCTC CTCATACATC 
TGAAAGCTGT TCCCAAACAA TGCGATTTTC GACAGTCGAT CCATTCTCCA 
ATTTGCTTGC AATAGGTTGC TGTATAGATT GGCCTCACAG TGTGGCATGA 
AGAAAAGAGT AGGCTTTAAA GCT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24000780 [Map]; Strand: w
  - AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
    Distance: -987; Region: promoter
  - AT5G59560.1 - [+] show detail - sensitivity to red light reduced protein (SRR1)
    Distance: 0; Region: exon2 (CDS)
  - AT5G59560.2 - [+] show detail - sensitivity to red light reduced protein (SRR1)
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-4293-1 - 3-prime edge
```
AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAG 
TCTCATTCGG AGCTGCCATT GTTCGTTTCA GACTAATTTT AGATCATTGT 
TTTCAAAAGC T
```

AT5G59550.1

Model type: Protein coding
Short Description: zinc finger (C3HC4-type RING finger) family protein
Computational Description: zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59560.1

Model type: Protein coding
Short Description: sensitivity to red light reduced protein (SRR1)
Curator Summary: Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.
Computational Description: SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 187 Blast hits to 182 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 13; Plants - 69; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59560.2

Model type: Protein coding
Short Description: sensitivity to red light reduced protein (SRR1)
Curator Summary: Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.
Computational Description: SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR