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53-4295-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18063282 [Map]; Strand: w
      • AT4G38640.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: -993; Region: promoter
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4295-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    GGTGGTTAGG CCATTCTCTA TTTGGGAGAG TTTCATTCAG AGAGGGAACA 
    ATATGTCAGA AACACTGAAC CTATTGAGTG AGTTCACGTG ATGATGTTGT 
    TATATGCGAA GTGTTTTTTT TTGTCATGTG AAGTTGTGCT TTTATATAGA 
    TACCTAGCCT ATTANAGTAC CACGGGTTGA TGCATGCTTT GGCTACAAGT 
    TTCTTACCTA AATCTTACCA TTTGCTTGTT TTGTGTTTGT GTGTGTGTGT 
    GCGTGCAAAA AACTCTCACN CCTGCAAAAT GCAATCTCAC GCTNCGATCC 
    ANATTTGTTT TCTATAGGAG ATGGATATAT CTGATAATAA AAATATTGAA 
    TATAGTTTTT TACTTTATTA TAAAATATAA ATTAAAAGTT AGAGATTTTG 
    AATTAACATA TTTAGTTTGA TTCNAAATTT AAATTTACAA GATTTTGNAC 
    TAATGTTTTT AATTTCTTAT TTTATANAAC TCAAATATTT GGAAAACAAT 
    ACAANGGGAA CCAATTACCA TAACTAAAGA ACCACCAAAA TTTTAAAAAT 
    TAATTTTGTT AGTTGATACA AAGGGAAACC AATATTATGG TCTATGCATT 
    TTTAGATTAC GTTGTTCTCA ACATTTGGAT ATAAATTTTT ACGAATTTAG 
    CTAAATTTCA TATCTTTAAA GTTAAAACTC TCAAAAGATT TCAAAGATTT 
    AGCTTTACAG TGGAAAAATT GGGCCCAAGT TAAN

AT4G38640.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR