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Mutant Lines
53-4296-1

53-4296-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20722656 [Map]; Strand: c
- AT1G55500.2 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon9 (3UTR)
- AT1G55500.3 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon9 (3UTR)
- AT1G55500.1 - [+] show detail - evolutionarily conserved C-terminal region 4
  Distance: 0; Region: exon8 (3UTR)
- AT1G55510.1 - [+] show detail - branched-chain alpha-keto acid decarboxylase E1 beta subunit
  Distance: -646; Region: promoter

ATTTTAATTG GATGTGTTAT CCTTGTCCAA TCAGCCTTTT AGGTTTTGAA 
ACCTTGGAAA CAGAGGAGAA ATGGAGAAGG AAAGAAGATA CTAAATTTTC 
AGATTGAAAG CAAAATCTAG AAGAAATTAA GAAAAGACTC AACAGAGTCA 
TGTCCGAACC AGAAACCAAA GAAAAATGAA AATCTGTCTA AGCTAAAACG 
AAAACAAACC CAACCCTGAT TTTATCTTTC ACTACTTCTT CATCTTCCCA 
CCGTATGCAG GGATCTTTAT ACGCATTTTA CATGGTAGAA TCAACAGTTC 
CTGGTTTCTC ATCATTGGTT TTTCCTTCCC AGACCTGTTA AAGATATATG 
GGTGCATTTC AATACTAGAG AGTAGAGAGG ACAAATGTAA ATGCATCTGC 
TTATATCTAT GGAATTAACC GTTTTCTTCT CTTGCCTGCT TCTGGGATTG 
TTGCTGCTTA GCTTTCTTCT CCAAAATAGT CTTTTGTCGA GCCTCGTAGA 
ACGAGAAATC ATCCAAAATG CATGTCTTGC TGTTATGCTC CTTGAAAATC 
TTTACAACCT TCAAACCCTG CTCCAACTTA ACCTACATAC ATGATCACAT 
GGAAAGAGTT TGAACATTGA AAAGTGGAAA ATATTGCTGG TAGATCAGAA 
ACATATAGAT CGAGAAGATA TAAACACTTA CCTCTTGNGT GTCTCTACTG 
GTAGTAACAN GGTTATTCTC ATT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20722772 [Map]; Strand: c
  - AT1G55510.1 - [+] show detail - branched-chain alpha-keto acid decarboxylase E1 beta subunit
    Distance: -530; Region: promoter
Flanking Genome Sequence: 53-4296-1 - 3-prime edge
```
ATTAAAATGT TATGTTTTTG TTAATACTCT ATAAACCTTT GTAGTTAGAC 
CATTAATTTT GTGTGAAACT CGTATAAAAT GAGTTAGTTG CAACTTGCAA 
GAGAAAGATA TCGATTCGTG TCGGATC
```

AT1G55500.1

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1490 Blast hits to 1324 proteins in 197 species: Archae - 2; Bacteria - 19; Metazoa - 721; Fungi - 248; Plants - 363; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55500.2

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55500.3

Model type: Protein coding
Short Description: evolutionarily conserved C-terminal region 4
Computational Description: evolutionarily conserved C-terminal region 4 (ECT4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1).
Link: InterPro Scan - TAIR

AT1G55510.1

Model type: Protein coding
Short Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit
Curator Summary: branched-chain alpha-keto acid decarboxylase E1 beta
Computational Description: branched-chain alpha-keto acid decarboxylase E1 beta subunit (BCDH BETA1); FUNCTIONS IN: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT3G13450.1); Has 16577 Blast hits to 16568 proteins in 2706 species: Archae - 211; Bacteria - 10745; Metazoa - 523; Fungi - 224; Plants - 389; Viruses - 0; Other Eukaryotes - 4485 (source: NCBI BLink).
Link: InterPro Scan - TAIR