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53-4302-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25374191 [Map]; Strand: c
      • AT5G63310.1 - [+] show detail - nucleoside diphosphate kinase 2
        Distance: -330; Region: promoter
    Flanking Genome Sequence: 53-4302-1 - 5-prime edge
    TCTAGAAGAC AAGACGATGA GTCTGTATTG CCTATTTTTC AACGTGACTC 
    TGTTGACAAT GATTCTAAAT CGACGAAAAA AGAAAAAGAA AAAAACAATT
    TTGCTACAAG AAAGATGGTT TGGTTTGGTA TTAAAGCAGC AAATTGTGCG
    ACTGTTGAAA TGTGCAGACT TTTGTTTTTT TTAATCTTTT AGAAGAGTAA
    ACTGTACAGG GAAAGAGAAA GAGTCTGTTT CCTCCATTTA AACGAGACAC
    TCTTTGTACT CGAACN
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25374307 [Map]; Strand: c
      • AT5G63310.1 - [+] show detail - nucleoside diphosphate kinase 2
        Distance: -446; Region: promoter
    Flanking Genome Sequence: 53-4302-1 - 3-prime edge
    CTTCTAGATG TATCTGGCTT TGCCTTTCTT TTGCTTGCTT TAGCCATTTC 
    ACGCCACATC AAATTTACAT TTTGTGCATA GAAGAATCAA TGCGTAAACA
    TCCCCAACTT TTTCTTTTCA TCTTGTTGCT TTTAACAAGA CCCGGAAAAA
    AGACTTCATC AATCAATTTC TACATCTATA TCTTCCTCTC CCTGGTCAAC
    AAGGTCAGTT TTTTGCCCTG CCTTGTCCAC AACTTCGGTT TCTACCTTTC
    CATTGCCATC AACTACAGTT TCGTTTCCTC CCTTGTCCGA AACTTCAGTT
    CCTTGCACTC CCTCACCATT GTCAACAGCT TCATTTTCTT CTACCCCCTT
    TTCGACAACT TCGCTTTTTT GCTCTCCCAA GTCGACAACT CCAGTTTCTT
    GCTCTTCTTT TTCAGTAACT CTACTTTCTT GCTCTGGCAC ATTCGCCAAT
    TGTTCTTCTC CTTCAATTTT ATCGATGGAT TTTTCATCTT CTTGGTTCCC
    ATTATCTTGT GTCTTTTGGC TTACCAGTTC TTCGTTTCCA CAATCGAGTT
    GGTTCTCTCC CTCTTCTCTG TGAGGACTAA AGTGTTTGTC CTTCACTTTT
    GTCAANGGAA AGTTCTTTTT CTACTCCGAC AACTTCAGTT TCTTGCTCTC
    CTGTATCATC ATCTCTACTA CTTTCTTGCT CTAGCACATT CTCCAATTGG
    TCTTCTCTCT CGCTTGATTG ATTTNTNNNT TTG

AT5G63310.1

Model type
Protein coding
Short Description
nucleoside diphosphate kinase 2
Curator Summary
Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.
Computational Description
nucleoside diphosphate kinase 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G09320.1); Has 9088 Blast hits to 8922 proteins in 2598 species: Archae - 291; Bacteria - 4641; Metazoa - 1094; Fungi - 170; Plants - 375; Viruses - 117; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR