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Mutant Lines
53-4307-1

53-4307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 25175305 [Map]; Strand: w
- AT5G62680.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -7362; Region: intergenic
- AT5G62690.1 - [+] show detail - tubulin beta chain 2
  Distance: -6110; Region: intergenic

CTTCGACATG TGCTTCTCTG CAAAACTGCA ACTTTATATA ATAAAGGTGT 
TACTTCTACA GTTTGCTTCT AAAATCCTCC AATCAGGCCA TCGCTCCCGG 
AATTTTTCTT TATTTCCGAT TTTTATTTTT ATGTTTTGTG AGGCCATTTA 
TTTAGAATTA CACTTCAAGT AGAAATGAGA ACAAAATACA TAAATGGTAA 
TGCAACCGAA AGTGTGTATA CCAAAGTACA TATACCCTCG AGACAGTAAG 
CTATTAAAAA TTCTCACTAT TAATATAAAG TTTGCCAAAA ACGATAATAG 
GTCCAATGAA ATTTCCGAAC TAATGTGTAA AGTGATACTC CTCATATACA 
ATTTGGAAGA GAATAACGAT TAAACGCCAA AGAATGGCTC TCAACAAACA 
CAACTCTGTT TTCGTGTGAA AAAGGTATAA GGTTACGATT GAGTTTGATT 
TGAGGTTCTA TAAAAAACTA GGGCAAGATC TTGAGTAACA ACACTTTCTG 
TAGCACGTTT TTTTTTTATA ATGATAATGT NCCNAGCGTA AAATTNNAAC 
TTACATANTT TTTTTTNTTC ATATTTNCGN GGNTTTTTCT TNTACTTTTN 
GACAAAGGGN NTAGGGTTTN GATCGTANCT AATAAANGGA ATCGAAAAAC 
CGTNGANTNN AATGATNNAN TTAANTAAAN AAANTAACCT TTNCCAAGGA 
NA

3 prime edge [+] show sequence

Chromosome: 5; Position: 25175189 [Map]; Strand: w
- AT5G62680.1 - [+] show detail - Major facilitator superfamily protein
  Distance: -7246; Region: intergenic
- AT5G62690.1 - [+] show detail - tubulin beta chain 2
  Distance: -6226; Region: intergenic

TGTCGAAGGT TCGATCACTT TTTGCCATAA ATAAACTTTT TCTTTTCAAA 
CAAAATTACT TTTTTTTTTC ATTCTTTNCA TTTATTTGGT ATTTATTCAN 
ACAAAATTCA AAAAGCAGCC ATCATCTNGT TNTATCATAA GTAANCNCGG 
GCTGTAACAA TTTTTACTAT CGGACTACCT AATTTNATTT TTTTNATTTT 
NGAATNAAAT TTTNAACTNG TTNTATAAAA CAAAACATTN TNGTCTGACT 
AGGGACNCNT NTNTNCANCA GTAATNTAAA TNCTTATAAC ANGTTATNCA 
TATGAAATNG GGTAANCNCC NCCAAATAAT TTTAAATAGG GGAAAAGGTA 
NCGGCANCNC GTTAGGCGTN GGATCGATNA TCGCAATCNC AATCGCTTTN 
GGAATATTTN GACTNGGAAT CNCTTTTAAN GGATGGGGGA AAACNACNCN 
CNCTTCTTCT CTCCCATTTC ATTGGTNTNG CTAAAACGNG ACCCNTTTCN 
ANGCTCTTCC TCCCACTTTC CGTTTTAAAN AACCCCAATT NTGATAATNC 
GCTTTCCATA ATTAAAANNC TCGTGGCCAT AAATTTACTN TTTTANCAAA 
TTGAANGGCC TTAAAAANGC CTTCCCCTTT TNTNAACNCN ACNCNCATTT 
ACAAANATGA TTCCACGGNA ATTTTTNTTA TCNAATNNTT TAAAAAAATC 
CCCGGGATNG NNTNCCTAAT NGCTTTTAAA NGGTTT

AT5G62680.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to karrikin; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G47960.1); Has 3769 Blast hits to 3614 proteins in 562 species: Archae - 0; Bacteria - 609; Metazoa - 518; Fungi - 366; Plants - 2162; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G62690.1

Model type: Protein coding
Short Description: tubulin beta chain 2
Curator Summary: encodes tubulin beta-2/beta-3 chain
Computational Description: tubulin beta chain 2 (TUB2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold; LOCATED IN: tubulin complex, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR