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53-4308-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107841 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4308-1 - 5-prime edge 
    CTTTCAAGGA CAACACCGTA CCTATCTGGT CTGTCCCTGT GTACGCTGTG 
    CTTCTTCCCA TCATAGTGTT CGTCTGCTTC TACCTGAAGA GGACATGTGT 
    GTACGATCTG CACCACAGCA TCCTCGGGCT GCTCTTCGCC GTCTTGATAA 
    CTGGTGTCAT CACTGACTCC ATCAAGGTAG CCACCGGACG CCCTCGTCCT 
    AACTTCTACT GGCGCTGCTT CCCCGACGGC AAAGAGCTGT ATGATGCGTT 
    GGGAGGTGTG GTATGCCACG GCAAGGCAGC TGAGGTCAAG GAAGGCCACA 
    AGAGCTTCCC GAGCGGACAC ACTTCCTGGT CCTTTGCGGG GCTTACATTC 
    CTTTCCCTTT ACCTCTCTGG CAAAATCAAG GCCTTCAACA ATGAAGGACA 
    TGTGGCTAAA CTCTGCCTCG TGATCTTCCC TCTGCTTGCC GCTTGTCTTG 
    TGGGGATATC TCGTGTGGAT GACTACTGGC ACCACTGGCA AGATGTCTTC 
    GCAGGAGCTC TCATTGGCAC CCTTGTAGCC GCCTTCTGCT ACCGTCAGTT 
    CTACCCCAAC CCTTACCACG AAGAAGGATG GGGTCCCTAC GCCTATTTCA 
    AGGCAGCTCA AGAACGANGA GTCCCTGTGA CCTCCTNCCA AAACGGAGAT 
    GCCTTGANGG CTATGTCTCT GCANATGGAT TCAACATCTN TCGAAAACAT 
    GGAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107957 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4308-1 - 3-prime edge 
    CTTGAAAGGG TACTTGAGGT CAGTCATCAT GTCTTTTCCC ACGTAGCGGT 
    AGAAAGGAGA GATGAGGTTC AAGCCTATCT CGATGGCAAT CAAGATGACG 
    AGTATGATCC AATCGTGCTT GTGTTTAGAA GCGACTCTTC CTCCATGGGA 
    CTTTATAGTG TGAACACTAA GATCTATCTC CTGCATCCTC CCTCTCTGCG 
    CCTCCTGGTC CTGCCACCAA AAACACAAAC AATCATCACA GTCAACTAAA 
    CCTTCTTCTA ATTGGATCTA AACAAACAAT TCATGGCTCT CTAAGAAATA 
    CTACTTGAGG GTTAGGGCTT GACATCTCCG GTTTGGATGA TAGTAACAAC 
    GGAATGCAAT TCATTCTATC GGATGAACAA ATTGGTTTAG GCAAACAAAG 
    AACTTTGTCA AAGACACGAC AACACTTTGC TCTACGGATC

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR